Factsheet for Bra028438.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G39670.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G39670.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G39670.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G39670.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G39670.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G39670.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67435	Canola	plastid	99.49	99.49
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	72.45	76.76
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	69.9	72.87
Bra039037.1-P	Field mustard	cytosol	38.27	71.43
AT5G39670.1	Thale cress	plastid	70.92	68.14
Bra033077.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	52.04	54.84
VIT_14s0108g01000.t01	Wine grape	cytosol	35.2	44.23
KRH01190	Soybean	cytosol, nucleus, vacuole	46.43	43.96
KRH40081	Soybean	cytosol	45.92	43.48
Bra030632.1-P	Field mustard	cytosol	17.35	41.46
Bra032444.1-P	Field mustard	cytosol	14.8	40.28
Bra000299.1-P	Field mustard	cytosol	14.29	38.89
KRH16684	Soybean	cytosol	37.24	37.82
Solyc02g067220.2.1	Tomato	extracellular	26.02	36.43
Solyc02g088090.1.1	Tomato	extracellular, golgi	32.65	35.36
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	33.16	34.76
PGSC0003DMT400064699	Potato	golgi	31.63	32.12

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra028438	EnsemblPlants:Bra028438.1	EnsemblPlants:Bra028438.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR002048	UniProt:M4EI23	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR45512	PANTHER:PTHR45512:SF1	SMART:SM00054	SUPFAM:SSF47473	TMHMM:TMhelix
UniParc:UPI00025432A8	SEG:seg	:	:	:	:

Description

AT5G39670 (E=9e-081) | calcium-binding EF hand family protein

Coordinates

chrA02:+:315952..316542

Molecular Weight (calculated)

22730.1 Da

IEP (calculated)

5.589

GRAVY (calculated)

-0.305

Length

196 amino acids

Sequence
(BLAST)

001: MTANHLYCLI TMEKSSLSQC KHSSSFPLFG LVDFFLIGFF RWVSFAQIFF SRFCHLPQHE HCVSEKKSKD LEIQSLIKHG NGLCIEDAEM VMQSLGLFTD
101: QESEGLQKRY SSEELSNLFE EKEPSLEEVK QAFDVFDENR DGFLDPIDLQ RVLSILGLKQ GSNLENCRRM IRSFHGNKNG RIDFQGFVKF MENNFC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.