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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plasma membrane 9
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G49760.1 Solyc01g008950.2.1 AT2G41090.1 17360592
AT5G49760.1 Solyc10g077010.1.1 AT2G41090.1 17360592
AT5G49760.1 Solyc10g081170.1.1 AT2G41090.1 17360592
AT5G49760.1 Solyc11g072240.1.1 AT2G41090.1 17360592
AT5G49760.1 Solyc12g099990.1.1 AT2G41090.1 17360592
AT5G49760.1 Solyc01g008950.2.1 AT2G41100.1 17360592
AT5G49760.1 Solyc10g077010.1.1 AT2G41100.1 17360592
AT5G49760.1 Solyc10g081170.1.1 AT2G41100.1 17360592
AT5G49760.1 Solyc11g072240.1.1 AT2G41100.1 17360592
AT5G49760.1 Solyc12g099990.1.1 AT2G41100.1 17360592
AT5G49760.1 Solyc03g005240.1.1 AT4G14640.1 17360592
AT5G49760.1 Solyc06g053930.2.1 AT4G14640.1 17360592
AT5G49760.1 Solyc01g008950.2.1 AT5G21274.1 17360592
AT5G49760.1 Solyc10g077010.1.1 AT5G21274.1 17360592
AT5G49760.1 Solyc10g081170.1.1 AT5G21274.1 17360592
AT5G49760.1 Solyc11g072240.1.1 AT5G21274.1 17360592
AT5G49760.1 Solyc12g099990.1.1 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH26180 Soybean cytosol 3.96 70.37
CDY21453 Canola plastid 25.1 54.9
Solyc10g054310.1.1 Tomato cytosol 4.38 54.55
CDX83185 Canola extracellular 13.65 53.04
Solyc01g102710.2.1 Tomato plasma membrane 51.98 52.47
KRH32710 Soybean plasma membrane 49.9 51.39
KRH30865 Soybean plasma membrane 49.38 50.91
KRH01898 Soybean plasma membrane 29.48 50.81
Solyc01g102700.2.1 Tomato plasma membrane 53.96 50.68
AT5G49760.1 Thale cress plasma membrane 50.21 50.58
CDX83184 Canola plasma membrane 49.58 49.95
CDY12940 Canola plasma membrane 48.33 49.84
Solyc10g085670.1.1 Tomato extracellular 50.0 49.79
CDY21455 Canola plasma membrane 49.17 49.53
Bra027053.1-P Field mustard plasma membrane 41.04 49.44
CDY19539 Canola plasma membrane 48.23 49.36
Bra037952.1-P Field mustard plasma membrane 48.12 49.15
CDY12939 Canola plasma membrane 48.02 49.15
CDX83183 Canola plasma membrane 41.46 49.01
Bra027054.1-P Field mustard plasma membrane 46.67 48.96
CDY21452 Canola plasma membrane 48.54 48.9
CDY61244 Canola plasma membrane 48.54 48.9
AT5G49770.1 Thale cress plasma membrane 47.92 48.63
Bra000592.1-P Field mustard plasma membrane 41.77 48.55
Solyc10g054300.1.1 Tomato cytosol, nucleus, plastid 8.33 48.48
CDY70266 Canola plasma membrane, plastid 31.98 47.89
CDY68959 Canola endoplasmic reticulum, golgi 17.71 47.35
CDY71822 Canola cytosol 7.4 46.41
AT5G49780.2 Thale cress plasma membrane 47.19 46.32
Solyc09g055180.2.1 Tomato cytosol, nucleus, plasma membrane 32.19 34.11
Solyc10g074890.1.1 Tomato cytosol, nucleus, plasma membrane 32.08 34.03
Solyc10g074900.1.1 Tomato cytosol, plasma membrane, plastid 31.46 33.26
Solyc09g055570.2.1 Tomato plasma membrane 31.98 33.01
Solyc10g012170.2.1 Tomato plastid 14.9 32.72
Solyc03g078470.2.1 Tomato cytosol 5.83 29.02
Solyc07g007780.2.1 Tomato nucleus 15.0 27.8
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.8.1Gene3D:3.30.200.20Gene3D:3.80.10.10GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0019538InterPro:IPR000719
InterPro:IPR032675UniProt:K4B1J6InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfPFAM:PF07714
PFAM:PF08263ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27003PANTHER:PTHR27003:SF134
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220SUPFAM:SSF52058SUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMEnsemblPlantsGene:Solyc01g102680.2EnsemblPlants:Solyc01g102680.2.1TMHMM:TMhelixUniParc:UPI0002767E47
SEG:seg:::::
Description
No Description!
Coordinates
chr1:+:91415289..91424889
Molecular Weight (calculated)
105126.0 Da
IEP (calculated)
6.179
GRAVY (calculated)
-0.111
Length
960 amino acids
Sequence
(BLAST)
001: MGSRSHVFLL IFVSQILAIL GQTNSNDATA LFALKSSWNN LPPNWEGSDP CGSSWAGLIC DNSRVTSIKL SGMGLEGNQF GDLSSLAALQ ILDLSNNVGL
101: KGTLPPSIGN LKNLTTLILV GCSFFGPIPE SIGSLQQLVF ISLTSNSFTG PIPPSIGNLS KLSWLDLSDN KINGTIPISQ GSALGLDSLV NTRHLHLSKN
201: KLSGLIQPQL FNASMKLIHV ILDHNQLTGE IPESLGSLQN LEILRLDWNS LNGSVPSELS NVTSLSELYA VSRDVKVSCY WYLSNNNLNG SIPDLASMNL
301: LTYVGMSNNS FNASDVPDWF TKLPLLKTLY MENTTLQGQI PVDLFSRPNL ETIGLANNKL NGTLDIGTRY GNNLTLDLRN NSIKDFTQKT GYNMNISLAG
401: NPLCDGTGAT AKYCAIQISN DSFSSPLQCP AMSCNSDKIL SPTCKCLYPY TGTLHFFSLS FSNLENSSYF TTLAGSMMSA FLSNGLPVDS VSLSDPTVDV
501: YSYLQIEAQI FPSTQDSFNH TSIPSIGYLL NRNPFQLQYF GPFFFTSESY CCFADGNKKS SSHTGIIIGV SVGCAVLVLL TFCAGLYAFR QRKMAKRAGH
601: SSNPFESWDR DTSGAVPQLK GARWFSFDEI RKCTNNFSES NCIGSGGYGK VFKGTLTAGE VVAIKRAQHG SMQGAFEFKT EIELLSRIHH KNVVSLVGFC
701: YEQGEQMLVY EYIPKGTLRE SLSVKPKFQL EWTRRLKIAL DAARGLAYLH ELADPPIIHR DVKSNNILLD DHLTAKVADF GLSKLLRDED KGHVTTQVKG
801: TLGYLDPEYY MSQQLTEKSD VYSFGVVLLE LITARAPIER GKHIVRLVAE TIYDSKDNSK LYQLIDPRIG PGSKLEGVDR LFTLGMRCVN ESGAERPSMG
901: EAVKEIESIL GLASLSKYTE GDLTSSSYED TTQVSLDDFY NDKAFDYSGK FPSGGMNTTY
Best Arabidopsis Sequence Match ( AT5G49760.1 )
(BLAST)
001: MSSRTGASLL LILFFFQICS VSALTNGLDA SALNALKSEW TTPPDGWEGS DPCGTNWVGI TCQNDRVVSI SLGNLDLEGK LPADISFLSE LRILDLSYNP
101: KLSGPLPPNI GNLGKLRNLI LVGCSFSGQI PESIGTLKEL IYLSLNLNKF SGTIPPSIGL LSKLYWFDIA DNQIEGELPV SNGTSAPGLD MLLQTKHFHF
201: GKNKLSGNIP KELFSSNMSL IHVLFDGNQF TGEIPETLSL VKTLTVLRLD RNKLIGDIPS YLNNLTNLNE LYLANNRFTG TLPNLTSLTS LYTLDVSNNT
301: LDFSPIPSWI SSLPSLSTLR MEGIQLNGPI PISFFSPPQL QTVILKRNSI VESLDFGTDV SSQLEFVDLQ YNEITDYKPS ANKVLQVILA NNPVCLEAGN
401: GPSYCSAIQH NTSFSTLPTN CSPCEPGMEA SPTCRCAYPF MGTLYFRSPS FSGLFNSTNF SILQKAIADF FKKFNYPVDS VGVRNIRENP TDHQLLIDLL
501: VFPLGRESFN QTGMSLVGFA FSNQTYKPPP IFGPYIFKAD LYKQFSDVEV SSKSSNKSIL IGAVVGVVVL LLLLTIAGIY ALRQKKRAER ATGQNNPFAK
601: WDTSKSSIDA PQLMGAKAFT FEELKKCTDN FSEANDVGGG GYGKVYRGIL PNGQLIAIKR AQQGSLQGGL EFKTEIELLS RVHHKNVVRL LGFCFDRNEQ
701: MLVYEYISNG SLKDSLSGKS GIRLDWTRRL KIALGSGKGL AYLHELADPP IIHRDIKSNN ILLDENLTAK VADFGLSKLV GDPEKTHVTT QVKGTMGYLD
801: PEYYMTNQLT EKSDVYGFGV VLLELLTGRS PIERGKYVVR EVKTKMNKSR SLYDLQELLD TTIIASSGNL KGFEKYVDLA LRCVEEEGVN RPSMGEVVKE
901: IENIMQLAGL NPNSDSATSS RTYEDAIKGS GDPYGSESFQ YSGNFPASKL EPQ
Arabidopsis Description
At5g49760 [Source:UniProtKB/TrEMBL;Acc:Q8GZ99]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.