Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68959 | Canola | endoplasmic reticulum, golgi | 92.81 | 39.55 |
| CDX83185 | Canola | extracellular | 37.25 | 23.08 |
| CDX83183 | Canola | plasma membrane | 97.39 | 18.35 |
| CDY21452 | Canola | plasma membrane | 95.42 | 15.32 |
| CDX83184 | Canola | plasma membrane | 94.12 | 15.11 |
| CDY61244 | Canola | plasma membrane | 93.46 | 15.01 |
| CDY21455 | Canola | plasma membrane | 93.46 | 15.01 |
| CDY12940 | Canola | plasma membrane | 77.78 | 12.78 |
| CDY19539 | Canola | plasma membrane | 77.12 | 12.58 |
| CDY12939 | Canola | plasma membrane | 75.16 | 12.26 |
| AT5G49770.1 | Thale cress | plasma membrane | 72.55 | 11.73 |
| AT5G49780.2 | Thale cress | plasma membrane | 74.51 | 11.66 |
| Solyc01g102680.2.1 | Tomato | plasma membrane | 46.41 | 7.4 |
| KRH30865 | Soybean | plasma membrane | 43.14 | 7.09 |
| KRH32710 | Soybean | plasma membrane | 43.14 | 7.08 |
| CDY49740 | Canola | cytosol | 58.82 | 6.45 |
| CDY61604 | Canola | plasma membrane | 39.22 | 6.37 |
| CDY11171 | Canola | plasma membrane | 39.22 | 6.36 |
| CDY57828 | Canola | plasma membrane | 39.22 | 6.36 |
| Bra027053.1-P | Field mustard | plasma membrane | 32.03 | 6.15 |
| CDY54882 | Canola | plasma membrane | 36.6 | 5.9 |
| CDY10230 | Canola | plasma membrane | 36.6 | 5.88 |
| CDY61605 | Canola | plasma membrane | 33.33 | 5.36 |
| CDY22287 | Canola | cytosol | 58.82 | 5.24 |
| CDY11169 | Canola | plasma membrane | 33.33 | 5.15 |
| CDX78191 | Canola | cytosol, plasma membrane | 34.64 | 4.5 |
| CDX73538 | Canola | cytosol, plasma membrane | 33.33 | 4.43 |
| CDX93101 | Canola | plasma membrane | 7.19 | 2.23 |
| CDY68222 | Canola | plasma membrane | 7.19 | 2.19 |
| CDX81429 | Canola | plasma membrane | 7.19 | 2.19 |
| CDY50413 | Canola | plasma membrane | 6.54 | 2.03 |
| CDY07228 | Canola | plastid | 3.27 | 1.23 |
| CDY54184 | Canola | plasma membrane, vacuole | 3.27 | 1.13 |
| CDY68957 | Canola | cytosol, plasma membrane | 2.61 | 0.94 |
| CDY70266 | Canola | plasma membrane, plastid | 2.61 | 0.62 |
| CDX80322 | Canola | mitochondrion | 3.27 | 0.55 |
| CDX76198 | Canola | cytosol | 0.0 | 0.0 |
| CDY21453 | Canola | plastid | 0.0 | 0.0 |
| CDY30856 | Canola | cytosol | 0.0 | 0.0 |
| KRH01898 | Soybean | plasma membrane | 0.0 | 0.0 |
| KRH26180 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY71822 | EnsemblPlantsGene:GSBRNA2T00020526001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_4 | PANTHER:PTHR27003 |
| PANTHER:PTHR27003:SF134 | PFAM:PF12799 | PFscan:PS51450 | ProteinID:CDY71822 | ProteinID:CDY71822.1 | SEG:seg |
| SUPFAM:SSF52058 | UniParc:UPI0004EE5ECB | UniProt:A0A078K1P5 | MapMan:35.1 | : | : |
Description
BnaCnng74640DBnaCnng74640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K1P5]
Coordinates
chrLK047671:-:660..2327
Molecular Weight (calculated)
16937.5 Da
IEP (calculated)
9.662
GRAVY (calculated)
-0.058
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLETKHFHF GKNKLSGHIP ENLFSSKMTL IHVLFDGNQF TGKIPDTLSL VKTLTVLRLD RNKLTGNIPT SLNNLTSLQE LYLANNEFTG TLPSLTSLTS
101: LYTLDVSNNT LESSPIPSWI SSLRSLATLR MEGIKLNGSI SNSFFSPPQL QTV
101: LYTLDVSNNT LESSPIPSWI SSLRSLATLR MEGIKLNGSI SNSFFSPPQL QTV
001: MICSNSTLCK LSCLHVLKAR QFSFIYLTCV HHLLFHRSFF DTIKSKGSEK RFFVDLTMSS RIRTCMLLIL FFFQKCYVSA LTNVFDASAL RGMKNEWTRS
101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL
201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT
301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV
401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV
101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL
201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT
301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV
401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV
Arabidopsis Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4K682]
SUBAcon: [plasma membrane,vacuole]
SUBAcon: [plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.