CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76198	Canola	cytosol	100.0	100.0
CDX73538	Canola	cytosol, plasma membrane	97.67	18.25
CDX78191	Canola	cytosol, plasma membrane	98.14	17.91
CDX83185	Canola	extracellular	2.79	2.43
CDY68959	Canola	endoplasmic reticulum, golgi	2.79	1.67
CDY61604	Canola	plasma membrane	5.58	1.27
CDY57828	Canola	plasma membrane	5.58	1.27
CDY11171	Canola	plasma membrane	5.58	1.27
CDY10230	Canola	plasma membrane	4.19	0.94
CDY54882	Canola	plasma membrane	3.72	0.84
CDY61605	Canola	plasma membrane	3.72	0.84
CDX93101	Canola	plasma membrane	1.86	0.81
CDY50413	Canola	plasma membrane	1.86	0.81
CDY11169	Canola	plasma membrane	3.72	0.81
CDY68222	Canola	plasma membrane	1.86	0.8
CDX81429	Canola	plasma membrane	1.86	0.8
CDY12940	Canola	plasma membrane	3.26	0.75
CDY12939	Canola	plasma membrane	3.26	0.75
CDY19539	Canola	plasma membrane	3.26	0.75
CDY61244	Canola	plasma membrane	3.26	0.73
CDY21452	Canola	plasma membrane	2.79	0.63
CDX83184	Canola	plasma membrane	2.79	0.63
CDX83183	Canola	plasma membrane	2.33	0.62
CDY21455	Canola	plasma membrane	2.33	0.52
CDY68957	Canola	cytosol, plasma membrane	0.93	0.47
CDY49740	Canola	cytosol	2.79	0.43
CDY22287	Canola	cytosol	2.79	0.35
CDY54184	Canola	plasma membrane, vacuole	0.47	0.23
CDY70266	Canola	plasma membrane, plastid	0.47	0.16
CDY21453	Canola	plastid	0.0	0.0
CDY07228	Canola	plastid	0.0	0.0
CDX80322	Canola	mitochondrion	0.0	0.0
CDY71822	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:A0A078CMA6	UniProt:A0A078CMA6	EnsemblPlants:CDY30856	ProteinID:CDY30856
ProteinID:CDY30856.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00046332001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000254527C	SEG:seg	:	:	:	:

Description

BnaC04g27110DBnaA04g04620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CMA6]

Coordinates

chrLK032262:+:197926..200115

Molecular Weight (calculated)

23835.3 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.365

Length

215 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KAKGQALADE YGMKFFETSA KTNLNVEEVF FSIGKDIKQR LADTDAKAEP QTIKINQNDQ
201: GAGTSQATQK SACCG

Best Arabidopsis Sequence Match ( AT3G53610.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDS VNKILVGNKA DMDESKRAVP KSKGQALADE YGMKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDARAEP QTIKINQSDQ
201: GAGTSQATQK SACCGT

Arabidopsis Description

RABE1ARas-related protein RABE1a [Source:UniProtKB/Swiss-Prot;Acc:O24466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.