CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71822	Canola	cytosol	39.55	92.81
CDX83185	Canola	extracellular	60.72	88.26
CDX83183	Canola	plasma membrane	84.4	37.32
CDY61244	Canola	plasma membrane	94.43	35.57
CDX83184	Canola	plasma membrane	84.96	32.0
CDY21455	Canola	plasma membrane	84.96	32.0
CDY21452	Canola	plasma membrane	84.12	31.69
CDY12940	Canola	plasma membrane	73.26	28.25
CDY19539	Canola	plasma membrane	72.7	27.83
CDY12939	Canola	plasma membrane	71.59	27.4
AT5G49780.2	Thale cress	plasma membrane	69.36	25.46
AT5G49770.1	Thale cress	plasma membrane	66.3	25.16
Bra027053.1-P	Field mustard	plasma membrane	44.01	19.82
KRH30865	Soybean	plasma membrane	47.08	18.15
KRH32710	Soybean	plasma membrane	46.8	18.03
Solyc01g102680.2.1	Tomato	plasma membrane	47.35	17.71
CDY49740	Canola	cytosol	50.97	13.11
CDY61604	Canola	plasma membrane	32.59	12.42
CDY11171	Canola	plasma membrane	32.59	12.39
CDY57828	Canola	plasma membrane	32.59	12.39
CDY54882	Canola	plasma membrane	31.48	11.91
CDY10230	Canola	plasma membrane	30.92	11.65
CDY61605	Canola	plasma membrane	30.36	11.46
CDY11169	Canola	plasma membrane	31.48	11.41
CDY22287	Canola	cytosol	50.7	10.59
CDX73538	Canola	cytosol, plasma membrane	28.41	8.86
CDX78191	Canola	cytosol, plasma membrane	28.97	8.83
CDY68222	Canola	plasma membrane	6.41	4.57
CDX81429	Canola	plasma membrane	6.41	4.57
CDX93101	Canola	plasma membrane	5.85	4.26
CDY50413	Canola	plasma membrane	5.57	4.06
KRH01898	Soybean	plasma membrane	4.74	3.05
CDY30856	Canola	cytosol	1.67	2.79
CDX76198	Canola	cytosol	1.67	2.79
CDY54184	Canola	plasma membrane, vacuole	3.34	2.7
CDY68957	Canola	cytosol, plasma membrane	2.79	2.35
CDY07228	Canola	plastid	2.51	2.21
CDY70266	Canola	plasma membrane, plastid	3.06	1.72
CDX80322	Canola	mitochondrion	2.79	1.11
CDY21453	Canola	plastid	0.0	0.0
KRH26180	Soybean	cytosol	0.0	0.0

Protein Annotations

MapMan:18.4.1.8.1	Gene3D:3.80.10.10	UniProt:A0A078JQ91	EnsemblPlants:CDY68959	ProteinID:CDY68959	ProteinID:CDY68959.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00081487001	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_4	PFAM:PF08263	PFAM:PF12799
PFscan:PS51450	PANTHER:PTHR27003	PANTHER:PTHR27003:SF134	SUPFAM:SSF52047	SUPFAM:SSF52058	TMHMM:TMhelix
UniParc:UPI0004EDC492	:	:	:	:	:

Description

BnaCnng61190DBnaCnng61190D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JQ91]

Coordinates

chrLK038346:-:547..3468

Molecular Weight (calculated)

39186.2 Da

IEP (calculated)

6.772

GRAVY (calculated)

0.065

Length

359 amino acids

Sequence
(BLAST)

001: TIKRRRKGKN FFVGSKMSSR IGAFMLLILL CFQFLSVSAL TNGFDASALQ ALKADWTKYP ESWVGADPCG TNWVGITCTN DRVVSISLGN LDVEGKLSSD
101: IASLTELQIL DLSYNTGLTG PLPSNIGQLK KLKNLILVAC SFSGQIPESI GDLEQLIYLS LNLNQFSGRI PASIGRLSNL YWFDIADNQI EGTLPVSNGT
201: SSPGLDMLLE TKHFHFGKNK LSGVIPETLF SSKMTLIHVL FDGNNLTGDI PDTLSLVKTL TVLRLDRNKL TGNIPTSLNN LTNLQELYLA NNEFTGSLPN
301: LTSLTSLYTL DVSNNTLEFS PIPSWISSLR SLATLRMEGI NLNGSIPNSF FSPPQLQTV

Best Arabidopsis Sequence Match ( AT5G49750.1 )
(BLAST)

001: MICSNSTLCK LSCLHVLKAR QFSFIYLTCV HHLLFHRSFF DTIKSKGSEK RFFVDLTMSS RIRTCMLLIL FFFQKCYVSA LTNVFDASAL RGMKNEWTRS
101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL
201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT
301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV
401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4K682]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.