CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76198	Canola	cytosol	18.25	97.67
CDY30856	Canola	cytosol	18.25	97.67
CDX78191	Canola	cytosol, plasma membrane	96.96	94.74
AT3G53590.1	Thale cress	mitochondrion, plasma membrane	66.38	80.93
CDY61604	Canola	plasma membrane	44.22	54.03
CDY57828	Canola	plasma membrane	43.79	53.39
CDY11171	Canola	plasma membrane	43.79	53.39
CDY54882	Canola	plasma membrane	41.79	50.68
CDY10230	Canola	plasma membrane	41.88	50.58
CDY61605	Canola	plasma membrane	36.06	43.64
CDY11169	Canola	plasma membrane	36.14	42.02
CDY21453	Canola	plastid	14.68	38.5
CDY71822	Canola	cytosol	4.43	33.33
CDY07228	Canola	plastid	11.73	33.17
CDY12939	Canola	plasma membrane	26.41	32.41
CDY19539	Canola	plasma membrane	26.41	32.41
CDY70266	Canola	plasma membrane, plastid	17.98	32.29
CDY12940	Canola	plasma membrane	25.98	32.12
CDY68957	Canola	cytosol, plasma membrane	11.82	32.0
CDY61244	Canola	plasma membrane	26.41	31.9
CDX83184	Canola	plasma membrane	26.24	31.69
CDY21452	Canola	plasma membrane	26.24	31.69
CDY21455	Canola	plasma membrane	26.06	31.48
CDX83183	Canola	plasma membrane	21.46	30.42
CDX81429	Canola	plasma membrane	12.86	29.42
CDY68222	Canola	plasma membrane	12.77	29.22
CDY68959	Canola	endoplasmic reticulum, golgi	8.86	28.41
CDX93101	Canola	plasma membrane	12.16	28.4
CDY50413	Canola	plasma membrane	11.99	27.99
CDX83185	Canola	extracellular	5.82	27.13
CDY54184	Canola	plasma membrane, vacuole	10.25	26.58
CDY49740	Canola	cytosol	26.15	21.56
CDY22287	Canola	cytosol	26.67	17.86
CDX80322	Canola	mitochondrion	11.9	15.17

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.8.1	MapMan:19.4.2.2	MapMan:22.8.1.5	Gene3D:3.30.200.20	Gene3D:3.40.50.300
Gene3D:3.80.10.10	GO:A0A078CF24	EnsemblPlants:CDX73538	ProteinID:CDX73538	ProteinID:CDX73538.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005525	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00109066001
InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:P-loop_NTPase	PFAM:PF00069	PFAM:PF00071	PFAM:PF00560	PFAM:PF08263
PFAM:PF13855	PRINTS:PR00449	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51419
PANTHER:PTHR27003	PANTHER:PTHR27003:SF36	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SMART:SM00220	SUPFAM:SSF52058	SUPFAM:SSF52540
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EDDD60
SEG:seg	:	:	:	:	:

Description

BnaC08g24650D

Coordinates

chrLK031799:+:1048774..1057591

Molecular Weight (calculated)

127997.0 Da

IEP (calculated)

7.242

GRAVY (calculated)

-0.209

Length

1151 amino acids

Sequence
(BLAST)

0001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIDLD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
0101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGKDIKQR LADTDARAEP QTIRINQSDQ
0201: GAGTSQATQK SACCGILMNS KTCGSVFLVA FCCLLLQSAD SRTDLSEVTA LRVIKRSLID PMRNLSNWEK GDPCNSNWTG ITCFERSHDD GHFHVRELQL
0301: MRLNLSGELA PEVGQLSYLE ILNVMWNNIT GRIPLEIGKI SSLKLLLLNG NKLTGSLPPE LGNLRNLNRL QVDENNITGS VPPAFGNMTS IKHLHLNNNT
0401: LTGEIPVELS KLNNLAHLIL DNNNLTGSLP QELARLPSFT ILQMDNNNFD GSEIPEAYGR FSRLVRLSLR NCGLQGSIPD LSSIKNLSFL DLSWNNLTGT
0501: IPESKLSDNM TTIELSYNNL TGSIPQSFSE LYSLQLLSLE NNSLSGSVPT AIWENKSFEN NKLQVDLRNN NFSDTTGNLR TPDNVTLYLR GNPICKSTSI
0601: PIVKQLFEYI CGEKKQTSTK SEHTPCNNAS CPYEKVPVSL GLCFCAAPLL IDYRLKSRSF FFFTPYIEHQ FMEYITTSLQ LQTHQLAIDR VVDENKQRLR
0701: MNIKLIPKGK TIFNVSEVIR IRGRFTSWTF PRNDFFGPYE LLDFPLEGPY ADLLAGESGI STVGWVMIVA ASIVAATVIS VSATLLYVKK RHGNLHALTR
0801: KRVSRSISRE IEGVKKFSFI ELSDATNGFD SSAVIGRGSY GKVYKGILPN KTVVAIKRGE ETSLQSEKEF LNEIDLLSRL HHRNLVSLVG YSSDIGEQML
0901: VYEYMPNGNV RDWLSANATE TLSFNMRAQV ALGSAKGILY LHAEANPPVI HRDIKTSNIL LDSQLHAKVA DFGLSRLAPN FGEGDCEPAH VSTVVRGTPG
1001: YLDPEYFMTR QLTVKSDVYS FGVVLLELLT GMHPFFEGTH IIREVRMANE CGTIQSMADS RMGQSSPDKV MKLAGLALWC CEDRPEMRPS MSKVVKELES
1101: ICQSVKETDM FSETTTLLYT KTSSSSSSSP VPSSLTGSNL DSGFFESVKP R

Best Arabidopsis Sequence Match ( AT3G53590.1 )
(BLAST)

001: MICLPFLGIL MSSRTRGSLL LVTFCCLLLH VAGYRTDPSE VNALREIKRS LIDPMRNLSN WAKGDPCNSN WTGIICFGRS HNDGHFHVRE LQLMRLNLSG
101: ELAPEVGQLL YLEILDVMWN NLTGRIPLEI GRISSLKLLL LNGNKFTGSL PPELGNLQNL NRLQVDENNI TGSVPFSFGN LRSIKHLHLN NNTISGEIPV
201: ELSKLPKLVH MILDNNNLTG TLPLELAQLP SLTILQLDNN NFEGSTIPEA YGHFSRLVKL SLRNCGLQGS IPDLSRIENL SYLDLSWNHL TGTIPESKLS
301: DNMTTIELSY NHLTGSIPQS FSDLNSLQLL SLENNSLSGS VPTEIWQDKS FENNKLQVDL RNNNFSDATG NLRTPDNVTL YLRGNPICKS TSIPMVTQFF
401: EYICGEKKQT STNSNTPCSN VSCPFENVKV SPGICLCTAP LSIDYRLKSP SFFFFTPYIE RQFREYITSS LQLETHQLAI DRLVDENRLR PRMYLKLVPK
501: GRITFNKSEV IRIRDRFMSW SFNKTDFFGP YELLDFPLQG PYADLLAQTS GIRTIVWMMI VAGSVVAATV LSVTATLLYV RKRRENSHTL TKKRVFRTIS
601: REIKGVKKFS FVELSDATNG FDSSTLIGRG SYGKVYKGIL SNKTEVAIKR GEETSLQSEK EFLNEIDLLS RLHHRNLVSL IGYSSDIGEQ MLVYEYMPNG
701: NVRDWLSANA ADTLSFSMRS HVALGSAKGI LYLHTEANPP VIHRDIKTSN ILLDCQLHAK VADFGLSRLA PAFGEGDGEP AHVSTVVRGT PGYLDPEYFM
801: TQQLTVRSDV YSFGVVLLEL LTGMHPFFEG THIIREVRTA NECGTVLSVA DSRMGQCSPD KVKKLAELAL WCCEDRPETR PPMSKVVKEL EGICQSVREP
901: EMFSETTKLL CSKTSPSSSS VPSPLSLLPG SNLDSGFFHA VKPR

Arabidopsis Description

Leucine-rich repeat protein kinase family protein [Source:TAIR;Acc:AT3G53590]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.