CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68959	Canola	endoplasmic reticulum, golgi	88.26	60.72
CDY71822	Canola	cytosol	23.08	37.25
CDX83183	Canola	plasma membrane	94.74	28.82
CDX83184	Canola	plasma membrane	98.79	25.6
CDY21455	Canola	plasma membrane	97.57	25.29
CDY21452	Canola	plasma membrane	94.33	24.45
CDY61244	Canola	plasma membrane	88.26	22.88
CDY12940	Canola	plasma membrane	77.33	20.52
CDY19539	Canola	plasma membrane	76.52	20.15
CDY12939	Canola	plasma membrane	74.9	19.72
AT5G49770.1	Thale cress	plasma membrane	70.85	18.5
AT5G49780.2	Thale cress	plasma membrane	72.47	18.3
Bra027053.1-P	Field mustard	plasma membrane	55.47	17.19
KRH30865	Soybean	plasma membrane	55.06	14.61
KRH32710	Soybean	plasma membrane	54.25	14.38
Solyc01g102680.2.1	Tomato	plasma membrane	53.04	13.65
CDY49740	Canola	cytosol	54.25	9.6
CDY11171	Canola	plasma membrane	31.17	8.16
CDY57828	Canola	plasma membrane	31.17	8.16
CDY54882	Canola	plasma membrane	31.17	8.11
CDY61604	Canola	plasma membrane	30.77	8.07
CDY10230	Canola	plasma membrane	30.77	7.97
CDY11169	Canola	plasma membrane	31.58	7.88
CDY61605	Canola	plasma membrane	29.96	7.78
CDY22287	Canola	cytosol	53.85	7.74
CDX73538	Canola	cytosol, plasma membrane	27.13	5.82
CDX78191	Canola	cytosol, plasma membrane	27.53	5.77
KRH01898	Soybean	plasma membrane	7.29	3.23
CDX76198	Canola	cytosol	2.43	2.79
CDY30856	Canola	cytosol	2.43	2.79
CDX93101	Canola	plasma membrane	5.26	2.64
CDY68222	Canola	plasma membrane	5.26	2.58
CDX81429	Canola	plasma membrane	5.26	2.58
CDY50413	Canola	plasma membrane	4.86	2.43
CDY68957	Canola	cytosol, plasma membrane	3.64	2.12
CDY54184	Canola	plasma membrane, vacuole	3.24	1.8
CDY07228	Canola	plastid	2.83	1.72
CDY70266	Canola	plasma membrane, plastid	3.24	1.25
CDX80322	Canola	mitochondrion	2.43	0.66
KRH26180	Soybean	cytosol	0.0	0.0
CDY21453	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX83185	EnsemblPlantsGene:GSBRNA2T00138719001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
PANTHER:PTHR27003	PANTHER:PTHR27003:SF134	PFAM:PF08263	ProteinID:CDX83185	ProteinID:CDX83185.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF52058	TMHMM:TMhelix	UniParc:UPI0004EE22F9	MapMan:35.1	:

Description

BnaA03g23210D

Coordinates

chrLK031832:+:299115..300504

Molecular Weight (calculated)

26671.4 Da

IEP (calculated)

6.508

GRAVY (calculated)

0.186

Length

247 amino acids

Sequence
(BLAST)

001: MSSRIGAFML LIFLFFQILS VSALTNGFDG SALQALKAEW TKPPSNWEGA DPCGTSWVGI TCSNNRVVSI SLGNLNVEGK LSGDIAALSE LQILDLSYNT
101: GLTGPLPPNI GELKKLKNLI LVGCSFTGQI PQSIGQLEQL IYLSLNLNQF SGTIPASIGR LSKLYWFDIA DNQIEGTLPV SNGTSSPGLD MLLETKHFHF
201: GKNKLSGHIP ENLFSSKMTL IHVLFDGNQF TGKIPDTLSL VKTLTVL

Best Arabidopsis Sequence Match ( AT5G49750.1 )
(BLAST)

001: MICSNSTLCK LSCLHVLKAR QFSFIYLTCV HHLLFHRSFF DTIKSKGSEK RFFVDLTMSS RIRTCMLLIL FFFQKCYVSA LTNVFDASAL RGMKNEWTRS
101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL
201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT
301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV
401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4K682]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.