CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08775
KRH08776
KRH38307
KRH38311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10660.1	KRH08775	AT5G24030.1	24280384
AT3G10660.1	KRH08776	AT5G24030.1	24280384
AT3G10660.1	KRH38307	AT5G24030.1	24280384
AT3G10660.1	KRH38311	AT5G24030.1	24280384

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33395	Soybean	endoplasmic reticulum, nucleus	98.27	97.93
VIT_13s0175g00080.t01	Wine grape	cytosol, plastid	83.77	85.24
PGSC0003DMT400002592	Potato	plastid	82.38	82.53
Solyc11g006370.1.1	Tomato	plastid	82.04	82.18
Solyc04g009800.2.1	Tomato	cytosol, plastid	80.66	80.38
PGSC0003DMT400065419	Potato	plastid	80.48	80.21
CDX70192	Canola	cytosol, plastid	77.89	78.85
CDX98791	Canola	cytosol, plastid	77.72	78.53
Bra009420.1-P	Field mustard	cytosol, plastid	79.1	77.5
CDX80925	Canola	cytosol	76.68	77.49
GSMUA_Achr7P07810_001	Banana	cytosol, plastid	66.84	76.94
CDY11313	Canola	cytosol	77.72	76.53
AT5G04870.1	Thale cress	cytosol, plastid	80.48	76.39
CDY08584	Canola	cytosol	75.82	76.22
GSMUA_AchrUn_...	Banana	cytosol	73.92	76.16
Bra005824.1-P	Field mustard	cytosol, plastid	79.1	75.58
CDY00963	Canola	plastid	74.44	75.09
CDY00688	Canola	plastid	76.68	74.0
CDX73914	Canola	plastid	76.34	73.79
KRH72128	Soybean	plastid	73.75	72.74
Os03t0788500-01	Rice	cytosol	73.75	71.29
KRH63919	Soybean	cytosol	60.28	70.36
AT3G10660.1	Thale cress	cytosol, plastid	78.07	69.97
EER93328	Sorghum	cytosol	74.44	69.85
Zm00001d034372_P001	Maize	cytosol	73.75	69.77
KRH54032	Soybean	cytosol	59.76	69.62
KRH32931	Soybean	plastid	71.16	69.24
KRG91803	Soybean	mitochondrion	58.55	69.18
KRH34984	Soybean	cytosol	58.72	69.11
Zm00001d040996_P003	Maize	plastid	72.19	68.64
KXG23457	Sorghum	plastid	72.71	68.34
TraesCS5D01G434500.2	Wheat	cytosol	73.4	68.11
TraesCS5B01G428400.2	Wheat	cytosol	73.23	67.62
TraesCS5A01G426500.1	Wheat	cytosol	73.23	67.62
TraesCS5B01G109300.1	Wheat	plastid	72.19	66.99
Zm00001d013109_P002	Maize	plasma membrane	71.68	66.94
TraesCS5D01G124000.1	Wheat	plastid	72.02	66.83
KRH59698	Soybean	plastid	58.38	66.67
KRH41022	Soybean	plastid	58.38	66.54
GSMUA_Achr4P22740_001	Banana	cytosol, plastid	73.92	66.46
KRH74107	Soybean	cytosol	62.87	66.3
KRH68038	Soybean	cytosol	66.32	65.08
KRH14008	Soybean	cytosol	62.69	65.05
KRH34983	Soybean	cytosol	53.89	64.73
KRG96293	Soybean	cytosol	65.46	63.91
GSMUA_Achr7P01360_001	Banana	cytosol	73.06	63.04
KRH27875	Soybean	nucleus	54.75	62.77
KRH59992	Soybean	endoplasmic reticulum	54.92	61.39
HORVU5Hr1G030810.1	Barley	cytosol	72.02	60.52
KRH77599	Soybean	nucleus	54.23	59.47
KRH14593	Soybean	cytosol	52.16	57.09
KRH73535	Soybean	cytosol	51.81	56.93
KRH73749	Soybean	nucleus	51.47	56.44
KRG89696	Soybean	cytosol, mitochondrion	53.2	56.41
KRH50623	Soybean	cytosol	52.5	56.19
KRH14398	Soybean	cytosol, nucleus	51.64	55.47
KRG98764	Soybean	cytosol	52.33	54.99
KRH46181	Soybean	nucleus	51.99	54.63
KRH02072	Soybean	endoplasmic reticulum, nucleus	50.43	54.28
KRH51083	Soybean	endoplasmic reticulum	49.57	54.25
KRH17481	Soybean	cytosol	49.4	53.26
KRH41261	Soybean	cytosol	40.07	53.09
KRH05995	Soybean	cytosol	46.46	52.44
Os12t0486600-00	Rice	plasma membrane	67.7	50.84
KRH05994	Soybean	cytosol	44.39	47.95
Bra001373.1-P	Field mustard	plastid	78.41	46.8
Bra029859.1-P	Field mustard	plastid	76.34	46.53
CDY00964	Canola	plastid	0.52	0.9
CDY00689	Canola	plastid	0.35	0.6

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:100797449	MapMan:18.4.5.4	Gene3D:3.30.200.20	ProteinID:ACU01867.1
EMBL:ACUP02012554	UniProt:D3G9M7	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_20G070700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004683	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738	GO:GO:0009931
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
GO:GO:0035556	GO:GO:0046777	InterPro:IPR000719	InterPro:IPR002048	ProteinID:KRG90146.1	EnsemblPlants:KRG90147
ProteinID:KRG90147	ProteinID:KRG90147.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF13499	ScanProsite:PS00018
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF161
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0001C3E690	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:25119755..25127616

Molecular Weight (calculated)

64972.5 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.393

Length

579 amino acids

Sequence
(BLAST)

001: MGNTCVGPSI SKNGFVQSVS AAIWRSQLPE DSVSNRESVK EEVTNVPESP LPVQNKPPEQ ITMPKPEAKQ EGKSEIEPEQ DKKKQKKRGS VKRVSSAGLR
101: VDSVLQRETD NFKEFFTLGR KLGQGQFGTT FLCVEKATGQ EYACKSIAKR KLVTDDDVED VRREIQIMHH LAGHPNVISI KGAYEDAMAV HVVMELCAGG
201: ELFDRIIQRG HYTERQAAEL TRTIVGVVEA CHSLGVMHRD LKPENFLFIN QHEDSLLKTI DFGLSVFFKP GDIFNDVVGS PYYVAPEVLR KRYGPEADVW
301: SAGVILYILL SGVPPFWAEN EQGIFEQVLR GDLDFSSDPW PSISESAKDL VRKMLVRDPR RRLTAHQVLC HPWIQVDGVA PDKPLDSAVL SRLKQFSAMN
401: KLKKMALIII AESLSEEEIA GLKEMFKMID ADNSGQITFE ELKAGLKRVG ANLKESEIYD LMQAADVDNS GTIDYGEFLA ATLHRNKIER EDNLFAAFSY
501: FDKDGSGYIT QEELQQACDE FGIKDVRLEE IIKEIDEDND GRIDYNEFVA MMQKGNLPAV GKKGLENSFS IKFREALKL

Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)

001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL

Arabidopsis Description

CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.