CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14398	Soybean	cytosol, nucleus	96.59	94.62
Solyc12g005040.1.1	Tomato	cytosol	15.91	81.55
KRG98764	Soybean	cytosol	82.77	79.31
KRH46181	Soybean	nucleus	82.58	79.13
VIT_19s0090g00410.t01	Wine grape	cytosol	79.55	78.36
PGSC0003DMT400071663	Potato	cytosol, plasma membrane	74.62	77.41
CDY36037	Canola	nucleus, plasma membrane	77.08	76.65
CDX82244	Canola	cytosol	77.08	76.22
Solyc07g064610.2.1	Tomato	nucleus	75.19	76.2
PGSC0003DMT400057484	Potato	cytosol	75.19	76.2
Bra001789.1-P	Field mustard	cytosol	77.46	75.46
TraesCS2A01G223100.2	Wheat	cytosol	75.57	75.0
TraesCS2B01G248700.2	Wheat	cytosol	75.57	75.0
KRH51083	Soybean	endoplasmic reticulum	74.62	74.48
Os07t0515100-01	Rice	cytosol	74.62	73.92
Zm00001d006479_P005	Maize	plasma membrane	73.67	73.26
GSMUA_Achr6P29450_001	Banana	cytosol	65.15	73.19
KXG36322	Sorghum	cytosol	73.48	73.07
KRH02072	Soybean	endoplasmic reticulum, nucleus	74.43	73.05
Zm00001d021623_P001	Maize	plasma membrane	73.3	72.88
AT1G50700.2	Thale cress	cytosol	74.62	72.03
TraesCS2D01G229100.2	Wheat	cytosol	73.48	71.72
HORVU2Hr1G046660.1	Barley	cytosol	73.48	71.72
CDY43077	Canola	cytosol	66.67	67.43
KRH27875	Soybean	nucleus	64.02	66.93
KRH59992	Soybean	endoplasmic reticulum	64.58	65.83
KRH77599	Soybean	nucleus	64.2	64.2
KRH17481	Soybean	cytosol	64.96	63.87
KRH14593	Soybean	cytosol	61.55	61.44
KRH73535	Soybean	cytosol	61.17	61.29
KRH05995	Soybean	cytosol	59.09	60.82
KRH50623	Soybean	cytosol	61.74	60.26
KRG89696	Soybean	cytosol, mitochondrion	61.55	59.52
KRH05994	Soybean	cytosol	60.42	59.51
GSMUA_Achr2P13980_001	Banana	plasma membrane	70.64	59.39
KRH63919	Soybean	cytosol	54.73	58.27
KRH54032	Soybean	cytosol	54.36	57.75
KRG91803	Soybean	mitochondrion	52.84	56.94
KRH34984	Soybean	cytosol	53.03	56.91
KRH41261	Soybean	cytosol	46.78	56.52
KRH41022	Soybean	plastid	53.22	55.31
KRH59698	Soybean	plastid	53.03	55.23
KRH74107	Soybean	cytosol	57.01	54.83
KRH14008	Soybean	cytosol	57.2	54.12
KRH34983	Soybean	cytosol	49.05	53.73
KRG90147	Soybean	cytosol, plastid	56.44	51.47
KRH33395	Soybean	endoplasmic reticulum, nucleus	55.87	50.77
KRH72128	Soybean	plastid	54.36	48.89
KRH68038	Soybean	cytosol	53.41	47.8
KRH32931	Soybean	plastid	53.79	47.73
KRG96293	Soybean	cytosol	53.03	47.22

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:100794568	MapMan:18.4.5.4	Gene3D:3.30.200.20	EMBL:ACUP02001288
ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_02G291300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004683	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738	GO:GO:0009931	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	GO:GO:0035556	GO:GO:0046777
UniProt:I1JJA3	InterPro:IPR000719	InterPro:IPR002048	EnsemblPlants:KRH73749	ProteinID:KRH73749	ProteinID:KRH73749.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF13499	ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF177	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233736D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:47075427..47079964

Molecular Weight (calculated)

59494.9 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.515

Length

528 amino acids

Sequence
(BLAST)

001: MGCCMSKKGS EPEEHIVYRH VAGAGGAGVY NNHKSHEPPS HQPYPLPEKH APWRPPPSPK HVHKHDTITG KPFEDVKQHY TLGKELGRGQ FGVTYLCTEN
101: STGFQYACKS ISKRKLVSRD DKEDMKREIQ IMQHLSGQSN IVEFKGAFED KQSVHVVMEL CAGGELFDRI IAKGHYSERA AASICRQVVK VVNTCHFMGV
201: IHRDLKPENF LLSSKDDKGL LKATDFGLSV FIEEGKVYRD IVGSAYYVAP EVLRRSYGKE ADIWSAGVIL YILLSGVPPF WAETEKGIFD VILQGHIDFE
301: SSPWPSISNS AKDLVRKMLI KDPKKRITAA QVLEHPWLKE GGNASDKPID SAVLSRMKQF RAMNKLKKLA LKVIAENLSE EEIQGLKAMF TNIDTDNSGT
401: ITYEELRAGL QRLGSKLTEA EVQQLMDAAD VDGNGTIDYI EFITATMHRH RLERDEHLHK AFQYFDKDGS GYITRDELET AMKEYGMGNE ATIREIISEV
501: DTDNDGRINY DEFCTMMRSG TQQQGKLF

Best Arabidopsis Sequence Match ( AT3G20410.1 )
(BLAST)

001: MGNCFAKNHG LMKPQQNGNT TRSVEVGVTN QDPPSYTPQA RTTQQPEKPG SVNSQPPPWR AAAAAPGLSP KTTTKSNSIL ENAFEDVKLF YTLGKELGRG
101: QFGVTYLCTE NSTGKKYACK SISKKKLVTK ADKDDMRREI QIMQHLSGQP NIVEFKGAYE DEKAVNLVME LCAGGELFDR IIAKGHYTER AAASVCRQIV
201: NVVKICHFMG VLHRDLKPEN FLLSSKDEKA LIKATDFGLS VFIEEGKVYR DIVGSAYYVA PEVLRRRYGK EVDIWSAGII LYILLSGVPP FWAETEKGIF
301: DAILEGHIDF ESQPWPSISS SAKDLVRRML TADPKRRISA ADVLQHPWLR EGGEASDKPI DSAVLSRMKQ FRAMNKLKKL ALKVIAENID TEEIQGLKAM
401: FANIDTDNSG TITYEELKEG LAKLGSKLTE AEVKQLMDAA DVDGNGSIDY IEFITATMHR HRLESNENLY KAFQHFDKDS SGYITIDELE SALKEYGMGD
501: DATIKEVLSD VDSDNDGRIN YEEFCAMMRS GNPQQQQPRL F

Arabidopsis Description

CPK9Calcium-dependent protein kinase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q38868]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.