CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02072	Soybean	endoplasmic reticulum, nucleus	93.38	91.82
VIT_10s0116g01800.t01	Wine grape	cytosol	75.8	78.02
KRH73749	Soybean	nucleus	74.48	74.62
GSMUA_Achr6P29450_001	Banana	cytosol	65.78	74.04
KRH14398	Soybean	cytosol, nucleus	74.86	73.47
Zm00001d021623_P001	Maize	plasma membrane	72.97	72.69
KXG36322	Sorghum	cytosol	72.97	72.69
TraesCS2A01G223100.2	Wheat	cytosol	72.97	72.56
TraesCS2B01G248700.2	Wheat	cytosol	72.97	72.56
Os07t0515100-01	Rice	cytosol	72.97	72.42
KRH46181	Soybean	nucleus	75.05	72.05
Solyc03g031670.2.1	Tomato	cytosol	75.24	71.97
Zm00001d006479_P005	Maize	plasma membrane	72.21	71.94
KRG98764	Soybean	cytosol	74.48	71.51
Solyc02g032820.2.1	Tomato	cytosol, plastid	57.09	70.4
HORVU2Hr1G046660.1	Barley	cytosol	70.51	68.95
TraesCS2D01G229100.2	Wheat	cytosol	70.51	68.95
KRH27875	Soybean	nucleus	62.0	64.95
KRH17481	Soybean	cytosol	64.46	63.5
KRH59992	Soybean	endoplasmic reticulum	62.0	63.32
KRH77599	Soybean	nucleus	61.81	61.93
KRH05995	Soybean	cytosol	59.55	61.4
KRH14593	Soybean	cytosol	60.3	60.3
KRH05994	Soybean	cytosol	60.87	60.07
KRH73535	Soybean	cytosol	59.74	59.96
GSMUA_Achr2P13980_001	Banana	plasma membrane	69.75	58.76
KRH50623	Soybean	cytosol	59.55	58.23
KRG89696	Soybean	cytosol, mitochondrion	59.74	57.88
KRH63919	Soybean	cytosol	54.25	57.86
KRH54032	Soybean	cytosol	54.25	57.75
KRG91803	Soybean	mitochondrion	53.31	57.55
KRH34984	Soybean	cytosol	53.31	57.32
KRH41022	Soybean	plastid	54.44	56.69
KRH59698	Soybean	plastid	54.25	56.61
KRH41261	Soybean	cytosol	45.94	55.61
KRH74107	Soybean	cytosol	56.52	54.46
KRH14008	Soybean	cytosol	56.71	53.76
KRH34983	Soybean	cytosol	48.2	52.9
KRG90147	Soybean	cytosol, plastid	54.25	49.57
KRH33395	Soybean	endoplasmic reticulum, nucleus	53.88	49.05
KRH72128	Soybean	plastid	53.5	48.21
KRH32931	Soybean	plastid	53.12	47.23
KRH68038	Soybean	cytosol	52.17	46.78
KRG96293	Soybean	cytosol	51.61	46.04

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:100816859	MapMan:18.4.5.4	Gene3D:3.30.200.20	UniProt:A0A0R0JFP2
EMBL:ACUP02004727	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_07G260200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005509	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR002048	EnsemblPlants:KRH51083	ProteinID:KRH51083
ProteinID:KRH51083.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF13499	ScanProsite:PS00018	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF174	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00018C6CBA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:43553319..43557813

Molecular Weight (calculated)

58724.8 Da

IEP (calculated)

6.137

GRAVY (calculated)

-0.443

Length

529 amino acids

Sequence
(BLAST)

001: MGCHGSKEKK SNTSYGSAAT GSGSGSGSGG GYNTVQPSPP TTDQVQASAQ TPENRKASPT VQKKADTSIV GKPFDDIKKY YSIGKELGRG QFGITYLCTE
101: NSSGGTYACK SILKRKLVSK ADREDMKREI QIMQHLSGQP NIVEFKGAFE DRFSVHLVME LCSGGELFDR IIAQGHYSER AAASLCRSIV NVVHICHFMG
201: VMHRDLKPEN FLLSTKDDHA TLKATDFGLS VFIEQGKVYH DMVGSAYYVA PEVLRRSYGK EIDIWSAGII LYILLSGVPP FWAETEKGIF NAILEGEIDF
301: VSEPWPSISD SAKDLVRKML TQDPKKRITS AQVLEHPWMR EGGDASDKPI DSAVLSRMKQ FRAMNKLKKL ALKVIAENLS EEEIKGLKAM FANMDTDSSG
401: TITYEELKTG LARIGSRLSE AEVKQLMDAA DVDGNGSIDY LEFISATMHR HRLERDEHLY KAFQYFDKDN SGYITRDELE TAMTQHGMGD EATIKEIISE
501: VDTDNDGRIN YEEFCAMMRS GMPHQGQLL

Best Arabidopsis Sequence Match ( AT4G04720.1 )
(BLAST)

001: MGCFSSKHRK TQNDGGEKSI PINPVQTHVV PEHRKPQTPT PKPMTQPIHQ QISTPSSNPV SVRDPDTILG KPFEDIRKFY SLGKELGRGQ FGITYMCKEI
101: GTGNTYACKS ILKRKLISKQ DKEDVKREIQ IMQYLSGQPN IVEIKGAYED RQSIHLVMEL CAGGELFDRI IAQGHYSERA AAGIIRSIVN VVQICHFMGV
201: VHRDLKPENF LLSSKEENAM LKATDFGLSV FIEEGKVYRD IVGSAYYVAP EVLRRSYGKE IDIWSAGVIL YILLSGVPPF WAENEKGIFD EVIKGEIDFV
301: SEPWPSISES AKDLVRKMLT KDPKRRITAA QVLEHPWIKG GEAPDKPIDS AVLSRMKQFR AMNKLKKLAL KVIAESLSEE EIKGLKTMFA NIDTDKSGTI
401: TYEELKTGLT RLGSRLSETE VKQLMEAADV DGNGTIDYYE FISATMHRYK LDRDEHVYKA FQHFDKDNSG HITRDELESA MKEYGMGDEA SIKEVISEVD
501: TDNDGRINFE EFCAMMRSGS TQPQGKLLPF H

Arabidopsis Description

CPK21Calcium-dependent protein kinase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.