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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d029758_P004 Maize cytosol 86.62 86.3
Os10t0539600-01 Rice nucleus 68.77 69.29
EER95585 Sorghum cytosol 65.61 64.89
OQU86029 Sorghum cytosol 52.42 55.95
EES11322 Sorghum mitochondrion 57.43 55.68
OQU85618 Sorghum mitochondrion 57.06 54.34
EES16732 Sorghum cytosol 47.77 49.9
EES09373 Sorghum cytosol, plastid 47.58 49.71
EES19734 Sorghum plastid 46.1 47.06
EER98014 Sorghum cytosol, plastid 50.19 46.47
EES01628 Sorghum cytosol 44.8 46.35
EER90764 Sorghum plastid 50.0 45.98
EES01094 Sorghum cytosol, mitochondrion 44.61 45.71
EES20022 Sorghum cytosol, mitochondrion 45.72 45.47
KXG36322 Sorghum cytosol 44.05 44.63
EER93328 Sorghum cytosol 50.93 44.41
KXG23457 Sorghum plastid 49.26 43.02
EES07931 Sorghum cytosol 42.94 42.94
EES12651 Sorghum cytosol 41.08 41.46
EES16538 Sorghum cytosol 43.87 41.12
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20EntrezGene:8062861UniProt:C5WTL5
EnsemblPlants:EER94580ProteinID:EER94580ProteinID:EER94580.1InterPro:EF-hand-dom_pairInterPro:EF_hand_domGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004683GO:GO:0005488GO:GO:0005509
GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009738GO:GO:0009931GO:GO:0009987
GO:GO:0010857GO:GO:0016301GO:GO:0016740GO:GO:0018105GO:GO:0019538GO:GO:0035556
GO:GO:0046777InterPro:IPR000719InterPro:IPR002048InterPro:Kinase-like_dom_sfPFAM:PF00069PFAM:PF13499
ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50222PANTHER:PTHR24349PANTHER:PTHR24349:SF119
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00054SMART:SM00220EnsemblPlantsGene:SORBI_3001G313100SUPFAM:SSF47473
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0001A8303ERefSeq:XP_002467582.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:60024223..60028947
Molecular Weight (calculated)
61043.0 Da
IEP (calculated)
4.786
GRAVY (calculated)
-0.487
Length
538 amino acids
Sequence
(BLAST)
001: MGNQCQNGTY GSNYNNYNHF QKGPLASRYY DGDDSEDCCS GPSRSSVADL MRQGLRRTLT SISVLGRKTP NVTEHYTLGR QLGEGLTGTT YLCTEISTGC
101: QYACKSILKA KFRNMQDIED VRREIQIMHY LSGQKHTVTI KDVYEDEEAV HIVMELCEGG ELYDRIKKEN YSEQKAADLI RIIVGIIENF HSLGVMHRDL
201: KPENFLLQDK DNDLSIKVID FGLSVFFKPG EVFTETVGSP YYIAPEVLQK HYGPEADVWT AGVILYVLLS GVPPFWADTH EGVLDKVWDG HFDFESDQWH
301: RISDSAKDLI RKMLCPCPSE RLKAHEVLKH PWICDNGAAT HQTLDPTILS HIDKLYAENR SKKLVLQVIA KHLSEEEIAR LRGMFKAMDN GNSGAITLAE
401: LKEGLRKSGS VFRNIGISDI MEADDYDNNI NINWEEFIAA TVPLSKTEHK EHLMEDFTYF DKDGSGYITV NEPQKASMEQ KLEDTFLEDL IYEVDQNNDG
501: RANYGEFVTM MQSDNSGLGW QTIESSMNVP LREAPEVY
Best Arabidopsis Sequence Match ( AT2G17290.1 )
(BLAST)
001: MGNSCRGSFK DKIYEGNHSR PEENSKSTTT TVSSVHSPTT DQDFSKQNTN PALVIPVKEP IMRRNVDNQS YYVLGHKTPN IRDLYTLSRK LGQGQFGTTY
101: LCTDIATGVD YACKSISKRK LISKEDVEDV RREIQIMHHL AGHKNIVTIK GAYEDPLYVH IVMELCAGGE LFDRIIHRGH YSERKAAELT KIIVGVVEAC
201: HSLGVMHRDL KPENFLLVNK DDDFSLKAID FGLSVFFKPG QIFKDVVGSP YYVAPEVLLK HYGPEADVWT AGVILYILLS GVPPFWAETQ QGIFDAVLKG
301: YIDFDTDPWP VISDSAKDLI RKMLCSSPSE RLTAHEVLRH PWICENGVAP DRALDPAVLS RLKQFSAMNK LKKMALKVIA ESLSEEEIAG LRAMFEAMDT
401: DNSGAITFDE LKAGLRRYGS TLKDTEIRDL MEAADVDNSG TIDYSEFIAA TIHLNKLERE EHLVSAFQYF DKDGSGYITI DELQQSCIEH GMTDVFLEDI
501: IKEVDQDNDG RIDYEEFVAM MQKGNAGVGR RTMKNSLNIS MRDV
Arabidopsis Description
CPK6Calcium-dependent protein kinase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q38872]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.