Factsheet for Os04t0643000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G520700.1	Wheat	cytosol	86.46	86.34
TraesCS2B01G550000.1	Wheat	cytosol	86.32	86.2
TraesCS2D01G522400.1	Wheat	cytosol	86.32	86.2
Os08t0170900-01	Rice	cytosol	83.31	83.31
HORVU2Hr1G115070.1	Barley	cytosol	86.18	82.79
Os02t0746000-01	Rice	cytosol	79.07	78.53
Os03t0786800-01	Rice	cytosol, plasma membrane	10.26	48.39
Os05t0149600-02	Rice	cytosol, plasma membrane	14.23	40.15
Os01t0369000-01	Rice	cytosol	35.57	34.95
Os01t0369200-01	Rice	cytosol	32.56	31.9
Os05t0193900-00	Rice	cytosol	12.45	22.58
Os01t0935300-02	Rice	cytosol	8.07	19.67
Os01t0706200-01	Rice	cytosol	3.83	17.5

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	EntrezGene:4337175	ProteinID:BAF15961.1
ProteinID:BAS91279.1	ProteinID:CAD41901.2	ProteinID:CAE05975.2	ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	ProteinID:EAZ32173.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	EnsemblPlantsGene:Os04g0643000	EnsemblPlants:Os04t0643000-01	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF74	UniProt:Q7XJX7	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785
SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI00001B0BDA	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015636933.1
SEG:seg	:	:	:	:	:

Description

CULLIN 3BSimilar to Cullin-3 (CUL-3). Splice isoform 2. (Os04t0643000-01)

Coordinates

chr4:+:32726344..32730766

Molecular Weight (calculated)

84809.0 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.571

Length

731 amino acids

Sequence
(BLAST)

001: MNSQKKRSPK IEPFRHRVDA DPKSFDKSWK KLEDAIREIY NHNASGLSFE ELYRTAYNLV LHKHGLKLYD KLTENLKGHL KEMCRSIEDA QGSLFLEELQ
101: RRWADHNKAL QMIRDILMYM DRTFIATNKK TPVFDLGLEL WRDIVVRTPK IHGRLLDTLL ELIHRERMGE MINRGLMRST TKMLMDLGSS VYHDDFEKPF
201: LEVSASFYSG ESQQFIECCD CGEYLKKAER RLAEELERVS QYMDAKTADK ITSVVDTEML ANHMQRLILM ENSGLVNMLV DDKHEDLSRM YNLFKRVPDG
301: HSTIRSVMAS HVKESGKALV SDPEKIKDPV EFVQRLLNEK DKYDEIISIS FSNDKAFQNA LNSSFENFIN LNNRSPEFIS LFVDDKLRKG VKGANEEDVE
401: TVLDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTTSDE AERSMLVKLK TECGYQFTSK LEGMFNDLKT SHDTMQSFYA NLSGDTDSPT ISVQILTTGS
501: WPTQPCTPCK LPPEIVDISE KFRAFYLGTH NGRRLTWQTN MGNADIKATF GGRRHELNVS TYQMCVLMLF NSADGLTYGD IEQATGIPHA DLKRCLQSLA
601: CVKGKNVLRK EPMSKDISED DTFYYNDKFT SKLVKVKIGT VVAQKETEPE KLETRQRVEE DRKPQIEAAI VRIMKSRRVL DHNSIITEVT KQLQSRFLPN
701: PVVIKKRIES LIEREFLERD KVDRKMYRYL A

Best Arabidopsis Sequence Match ( AT1G69670.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKQRVVV DPKYADKTWK ILEHAIHEIY NHNASGLSFE ELYRNAYNMV LHKYGDKLYT GLVTTMTFHL KEICKSIEEA QGGAFLELLN
101: RKWNDHNKAL QMIRDILMYM DRTYVSTTKK THVHELGLHL WRDNVVYSSK IQTRLLNTLL DLVHKERTGE VIDRVLMRNV IKMFMDLGES VYQDDFEKPF
201: LEASAEFYKV ESMEFIESCD CGEYLKKAEK PLVEEVERVV NYLDAKSEAK ITSVVEREMI ANHVQRLVHM ENSGLVNMLL NDKYEDMGRM YSLFRRVANG
301: LVTVRDVMTL HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDRIINMA FNNDKTFQNA LNSSFEYFVN LNTRSPEFIS LFVDDKLRKG LKGVGEEDVD
401: LILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERNLIVKLK TECGYQFTSK LEGMFTDMKT SHDTLLGFYN SHPELSEGPT LVVQVLTTGS
501: WPTQPTIQCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAVF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPT PDLKRCLQSM
601: ACVKGKNVLR KEPMSKEIAE EDWFVVNDRF ASKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRRV LDHNNIIAEV TKQLQTRFLA
701: NPTEIKKRIE SLIERDFLER DNTDRKLYRY LA

Arabidopsis Description

CUL3BCullin-3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C9L0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.