Factsheet for Os05t0550300-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

extracellular: 18372294
extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G001480.2	Barley	cytosol	42.55	83.33
TraesCS1B01G394500.1	Wheat	extracellular	72.34	70.83
TraesCS1B01G394100.1	Wheat	extracellular	71.28	69.79
TraesCS1D01G380800.1	Wheat	extracellular	71.28	69.79
Zm00001d037677_P001	Maize	endoplasmic reticulum, plasma membrane	74.47	69.31
HORVU1Hr1G083170.1	Barley	extracellular	70.21	68.75
TraesCS1A01G374200.1	Wheat	extracellular	70.21	68.75
TraesCS1D01G381100.1	Wheat	extracellular	70.21	68.75
EES18625	Sorghum	extracellular	70.21	68.04
HORVU1Hr1G083160.1	Barley	extracellular	69.15	67.71
TraesCS1B01G394400.1	Wheat	extracellular	69.15	67.71
TraesCS1A01G374300.1	Wheat	extracellular	69.15	67.71
Zm00001d038911_P001	Maize	extracellular	67.02	62.38
Os05t0550600-02	Rice	extracellular	54.26	53.12
VIT_14s0006g02530.t01	Wine grape	plastid	42.55	49.38
Os10t0504900-01	Rice	extracellular	42.55	48.78
Os10t0505700-01	Rice	extracellular, nucleus, plastid	44.68	46.15
Os10t0505500-01	Rice	extracellular	45.74	45.74
VIT_17s0000g03280.t01	Wine grape	extracellular	44.68	45.65
GSMUA_Achr9P21450_001	Banana	endoplasmic reticulum, plasma membrane, plastid	52.13	45.37
KRH48557	Soybean	extracellular	44.68	45.16
Os06t0705400-02	Rice	extracellular, plasma membrane	44.68	44.68
KRH70406	Soybean	extracellular	44.68	44.21
GSMUA_Achr9P18720_001	Banana	extracellular	42.55	43.96
GSMUA_Achr2P06400_001	Banana	extracellular	42.55	43.96
Bra040627.1-P	Field mustard	extracellular	43.62	43.16
Os10t0504650-00	Rice	endoplasmic reticulum, extracellular, plasma membrane	45.74	43.0
CDY50600	Canola	extracellular	44.68	42.86
CDY52889	Canola	extracellular	43.62	42.71
KRH39147	Soybean	extracellular	41.49	41.94
CDY12591	Canola	extracellular	43.62	41.84
VIT_14s0006g02550.t01	Wine grape	extracellular	40.43	41.3
Os03t0111300-01	Rice	extracellular	41.49	40.62
KRG93187	Soybean	extracellular	40.43	39.18
KRH33571	Soybean	extracellular	41.49	39.0
Os10t0505000-01	Rice	extracellular	41.49	39.0
KRH01717	Soybean	extracellular	39.36	38.95
KRH56524	Soybean	extracellular	39.36	37.0
AT5G38170.1	Thale cress	extracellular	40.43	36.89
AT1G66850.1	Thale cress	extracellular	39.36	36.27
AT5G38160.1	Thale cress	extracellular	39.36	35.92
Bra028162.1-P	Field mustard	extracellular	38.3	35.29
CDY61300	Canola	extracellular	36.17	35.05
CDY15628	Canola	extracellular	35.11	34.02
Bra030699.1-P	Field mustard	extracellular	35.11	34.02
AT1G07747.1	Thale cress	extracellular	34.04	33.68
CDX95132	Canola	extracellular	35.11	33.33
CDY61301	Canola	extracellular	36.17	32.38
AT2G14846.1	Thale cress	extracellular	34.04	32.32
AT1G43666.1	Thale cress	extracellular	32.98	32.29
AT3G57310.1	Thale cress	extracellular	35.11	32.04
CDY26874	Canola	extracellular	32.98	31.96
Bra008375.1-P	Field mustard	extracellular	32.98	31.96
CDY12874	Canola	extracellular	32.98	31.96
Bra027114.1-P	Field mustard	extracellular	32.98	31.96
CDY40472	Canola	extracellular	32.98	31.96
CDY15627	Canola	extracellular	35.11	31.43
CDX93626	Canola	extracellular	32.98	31.31
CDX95131	Canola	extracellular	32.98	31.31
Os01t0691100-01	Rice	endoplasmic reticulum, extracellular, mitochondrion	40.43	30.65
AT1G43667.1	Thale cress	extracellular	31.91	30.61
AT5G38195.1	Thale cress	extracellular	30.85	30.53
AT4G12825.1	Thale cress	extracellular	30.85	30.53
CDX93624	Canola	extracellular	31.91	30.3
Bra018687.1-P	Field mustard	extracellular	30.85	29.29
Os11t0620300-01	Rice	extracellular	34.04	29.09
Bra033084.1-P	Field mustard	extracellular	30.85	29.0
CDY70822	Canola	extracellular	30.85	28.43
CDY01688	Canola	plastid	37.23	26.52
AT5G38180.1	Thale cress	extracellular	26.6	26.32
CDY04056	Canola	extracellular	27.66	25.74
AT1G43665.1	Thale cress	extracellular	32.98	25.2
AT5G38197.1	Thale cress	extracellular	24.47	23.96
CDY44406	Canola	extracellular	34.04	17.3
Bra033087.1-P	Field mustard	extracellular	34.04	15.69

Protein Annotations

Gene3D:1.10.110.10	MapMan:35.2	EntrezGene:4339526	ProteinID:AAT39264.1	EMBL:AK062463	ProteinID:BAF18155.1
ProteinID:BAS95209.1	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
EnsemblPlantsGene:Os05g0550300	EnsemblPlants:Os05t0550300-01	PFAM:PF14368	PANTHER:PTHR33214	PANTHER:PTHR33214:SF5	UniProt:Q6L4H1
SMART:SM00499	SUPFAM:SSF47699	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000037806B	RefSeq:XP_015637804.1
InterPro:nsLTP2	SEG:seg	:	:	:	:

Description

non-specific lipid transfer protein 2.4, lipid transfer protein 2.4, type 2 non-specific lipid transfer protein 4Similar to Lipid transfer protein (Fragment). (Os05t0550300-01)

Coordinates

chr5:+:27330717..27331341

Molecular Weight (calculated)

9527.7 Da

IEP (calculated)

8.206

GRAVY (calculated)

0.435

Length

94 amino acids

Sequence
(BLAST)

1: MAKVALAVAA MAVLLLLAAA AAPGAEAACD ALQLSPCASA IIGNASPSAS CCSRMKEQQP CLCQYARDPN LQRYVNSPNG KKVLAACHVP VPSC

Best Arabidopsis Sequence Match ( AT3G18280.2 )
(BLAST)

001: MSKTTTHQKH ISINSETNKR SRRNMVMIKT TMVSLFALAA VLLMILAPAA EAVTCSPMQL SPCATAITSS SPPSALCCAK LKEQRPCLCG YMRNPSLRRF
101: VSTPNARKVS KSCKLPIPRC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP30]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.