Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38195.1 | Thale cress | extracellular | 71.58 | 71.58 |
| AT5G38197.1 | Thale cress | extracellular | 63.16 | 62.5 |
| Bra028162.1-P | Field mustard | extracellular | 60.0 | 55.88 |
| CDY01688 | Canola | plastid | 61.05 | 43.94 |
| AT1G07747.1 | Thale cress | extracellular | 42.11 | 42.11 |
| AT1G66850.1 | Thale cress | extracellular | 43.16 | 40.2 |
| AT2G14846.1 | Thale cress | extracellular | 41.05 | 39.39 |
| AT3G57310.1 | Thale cress | extracellular | 42.11 | 38.84 |
| AT5G38160.1 | Thale cress | extracellular | 42.11 | 38.84 |
| AT5G38170.1 | Thale cress | extracellular | 41.05 | 37.86 |
| HORVU0Hr1G001480.2 | Barley | cytosol | 18.95 | 37.5 |
| AT4G12825.1 | Thale cress | extracellular | 35.79 | 35.79 |
| AT1G48750.1 | Thale cress | extracellular | 32.63 | 32.98 |
| GSMUA_Achr2P06400_001 | Banana | extracellular | 31.58 | 32.97 |
| AT1G43667.1 | Thale cress | extracellular | 32.63 | 31.63 |
| AT1G43666.1 | Thale cress | extracellular | 31.58 | 31.25 |
| GSMUA_Achr9P18720_001 | Banana | extracellular | 28.42 | 29.67 |
| AT1G73780.1 | Thale cress | extracellular | 30.53 | 29.59 |
| Os05t0550600-02 | Rice | extracellular | 29.47 | 29.17 |
| TraesCS3D01G261600.1 | Wheat | extracellular | 28.42 | 28.42 |
| TraesCS3A01G261600.1 | Wheat | extracellular | 28.42 | 28.42 |
| TraesCS1D01G381100.1 | Wheat | extracellular | 28.42 | 28.12 |
| TraesCS1B01G394500.1 | Wheat | extracellular | 28.42 | 28.12 |
| EES18626 | Sorghum | extracellular | 30.53 | 27.88 |
| TraesCS1B01G394700.1 | Wheat | extracellular | 28.42 | 27.84 |
| TraesCS1A01G374500.1 | Wheat | extracellular | 28.42 | 27.84 |
| TraesCS1D01G381300.1 | Wheat | extracellular | 28.42 | 27.55 |
| TraesCS1D01G381200.1 | Wheat | extracellular | 28.42 | 27.55 |
| TraesCS1A01G374400.1 | Wheat | extracellular | 28.42 | 27.55 |
| TraesCS1B01G394100.1 | Wheat | extracellular | 27.37 | 27.08 |
| TraesCS3B01G294800.1 | Wheat | extracellular | 27.37 | 27.08 |
| TraesCS1D01G380800.1 | Wheat | extracellular | 27.37 | 27.08 |
| TraesCS1B01G394400.1 | Wheat | extracellular | 27.37 | 27.08 |
| TraesCS1A01G374300.1 | Wheat | extracellular | 27.37 | 27.08 |
| TraesCS1A01G374200.1 | Wheat | extracellular | 27.37 | 27.08 |
| HORVU1Hr1G083170.1 | Barley | extracellular | 27.37 | 27.08 |
| HORVU1Hr1G083160.1 | Barley | extracellular | 27.37 | 27.08 |
| AT3G18280.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane, plastid | 33.68 | 26.67 |
| Os05t0550300-01 | Rice | extracellular | 26.32 | 26.6 |
| Os01t0691100-01 | Rice | endoplasmic reticulum, extracellular, mitochondrion | 33.68 | 25.81 |
| EES18625 | Sorghum | extracellular | 26.32 | 25.77 |
| Zm00001d038913_P001 | Maize | endoplasmic reticulum, extracellular | 26.32 | 25.51 |
| TraesCS1D01G381600.1 | Wheat | extracellular | 26.32 | 25.51 |
| GSMUA_Achr9P21450_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 28.42 | 25.0 |
| Zm00001d037677_P001 | Maize | endoplasmic reticulum, plasma membrane | 26.32 | 24.75 |
| Zm00001d038911_P001 | Maize | extracellular | 26.32 | 24.75 |
| AT1G43665.1 | Thale cress | extracellular | 31.58 | 24.39 |
| HORVU1Hr1G083180.1 | Barley | endoplasmic reticulum, extracellular | 28.42 | 21.95 |
| HORVU1Hr1G083210.1 | Barley | plastid | 28.42 | 21.77 |
| TraesCS1B01G394600.1 | Wheat | plastid | 24.21 | 15.97 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.2 | EntrezGene:833798 | ProteinID:AED94276.1 | ArrayExpress:AT5G38180 | EnsemblPlantsGene:AT5G38180 |
| RefSeq:AT5G38180 | TAIR:AT5G38180 | RefSeq:AT5G38180-TAIR-G | EnsemblPlants:AT5G38180.1 | TAIR:AT5G38180.1 | EMBL:BT011202 |
| EMBL:BT012136 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 |
| RefSeq:NP_198634.1 | PFAM:PF14368 | PANTHER:PTHR33214 | PANTHER:PTHR33214:SF7 | UniProt:Q6NM41 | SUPFAM:SSF47699 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000016278A | InterPro:nsLTP2 | : | : |
Description
At5g38180 [Source:UniProtKB/TrEMBL;Acc:Q6NM41]
Coordinates
chr5:+:15229810..15230243
Molecular Weight (calculated)
10836.8 Da
IEP (calculated)
7.957
GRAVY (calculated)
0.342
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MKFMTLMVIT FVIIVLSSPI LMKAEETQSC VPMELMPCLP AMTKREQPTK DCCENLIKQK TCLCDYIKNP LYSMFTISLV ARKVLETCNV PYTSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.