Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- extracellular 3
- endoplasmic reticulum 2
- plasma membrane 3
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92224 | Canola | extracellular | 71.67 | 89.58 |
| Bra022308.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 71.67 | 89.58 |
| CDY24453 | Canola | extracellular | 70.83 | 88.54 |
| CDY48021 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.5 | 84.38 |
| CDX95546 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.5 | 84.38 |
| Bra021299.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 65.0 | 80.41 |
| AT1G48750.1 | Thale cress | extracellular | 52.5 | 67.02 |
| VIT_14s0006g02530.t01 | Wine grape | plastid | 35.83 | 53.09 |
| KRH70406 | Soybean | extracellular | 40.0 | 50.53 |
| KRH01717 | Soybean | extracellular | 39.17 | 49.47 |
| Solyc02g086310.1.1 | Tomato | extracellular | 37.5 | 47.87 |
| PGSC0003DMT400067824 | Potato | extracellular | 37.5 | 47.87 |
| PGSC0003DMT400056028 | Potato | extracellular | 36.67 | 47.83 |
| VIT_14s0006g02550.t01 | Wine grape | extracellular | 30.83 | 40.22 |
| AT1G73780.1 | Thale cress | extracellular | 32.5 | 39.8 |
| AT5G38195.1 | Thale cress | extracellular | 30.83 | 38.95 |
| AT5G38160.1 | Thale cress | extracellular | 32.5 | 37.86 |
| AT2G14846.1 | Thale cress | extracellular | 30.0 | 36.36 |
| AT1G66850.1 | Thale cress | extracellular | 30.83 | 36.27 |
| AT5G38170.1 | Thale cress | extracellular | 30.0 | 34.95 |
| AT5G38180.1 | Thale cress | extracellular | 26.67 | 33.68 |
| AT1G43666.1 | Thale cress | extracellular | 26.67 | 33.33 |
| AT5G38197.1 | Thale cress | extracellular | 25.83 | 32.29 |
| AT1G43667.1 | Thale cress | extracellular | 25.83 | 31.63 |
| AT1G07747.1 | Thale cress | extracellular | 24.17 | 30.53 |
| AT3G57310.1 | Thale cress | extracellular | 25.83 | 30.1 |
| AT4G12825.1 | Thale cress | extracellular | 23.33 | 29.47 |
| AT1G43665.1 | Thale cress | extracellular | 28.33 | 27.64 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.2 | EntrezGene:821356 | UniProt:A0A1I9LP30 | ProteinID:AEE76075.1 | ProteinID:ANM64338.1 |
| ArrayExpress:AT3G18280 | EnsemblPlantsGene:AT3G18280 | RefSeq:AT3G18280 | TAIR:AT3G18280 | RefSeq:AT3G18280-TAIR-G | EnsemblPlants:AT3G18280.2 |
| EMBL:AY039903 | EMBL:AY077680 | Unigene:At.6715 | ProteinID:BAB01177.1 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store |
| GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | RefSeq:NP_001326374.1 | RefSeq:NP_188456.1 | ProteinID:OAP03142.1 |
| PFAM:PF14368 | PANTHER:PTHR33214 | PANTHER:PTHR33214:SF19 | SMART:SM00499 | SUPFAM:SSF47699 | TMHMM:TMhelix |
| UniParc:UPI0008494AC8 | InterPro:nsLTP2 | SEG:seg | : | : | : |
Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP30]
Coordinates
chr3:+:6266946..6267643
Molecular Weight (calculated)
13112.4 Da
IEP (calculated)
10.889
GRAVY (calculated)
-0.022
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKTTTHQKH ISINSETNKR SRRNMVMIKT TMVSLFALAA VLLMILAPAA EAVTCSPMQL SPCATAITSS SPPSALCCAK LKEQRPCLCG YMRNPSLRRF
101: VSTPNARKVS KSCKLPIPRC
101: VSTPNARKVS KSCKLPIPRC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.