Factsheet for Bra022308.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24453	Canola	extracellular	98.96	98.96
CDX92224	Canola	extracellular	97.92	97.92
Bra021299.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	88.54	87.63
Bra001701.1-P	Field mustard	extracellular	83.33	83.33
AT3G18280.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane, plastid	89.58	71.67
Bra032265.1-P	Field mustard	extracellular	61.46	60.82
Bra014154.1-P	Field mustard	extracellular	56.25	55.67
VIT_14s0006g02530.t01	Wine grape	plastid	43.75	51.85
KRH70406	Soybean	extracellular	51.04	51.58
KRH01717	Soybean	extracellular	50.0	50.53
Solyc02g086310.1.1	Tomato	extracellular	48.96	50.0
PGSC0003DMT400067824	Potato	extracellular	48.96	50.0
PGSC0003DMT400056028	Potato	extracellular	46.88	48.91
Bra040627.1-P	Field mustard	extracellular	41.67	42.11
VIT_14s0006g02550.t01	Wine grape	extracellular	39.58	41.3
Bra015966.1-P	Field mustard	extracellular	40.62	40.21
Bra028162.1-P	Field mustard	extracellular	42.71	40.2
Bra030699.1-P	Field mustard	extracellular	38.54	38.14
Bra027114.1-P	Field mustard	extracellular	38.54	38.14
Bra008112.1-P	Field mustard	extracellular	37.5	36.73
Bra018687.1-P	Field mustard	extracellular	35.42	34.34
Bra008375.1-P	Field mustard	extracellular	34.38	34.02
Bra033084.1-P	Field mustard	extracellular	27.08	26.0
Bra033087.1-P	Field mustard	extracellular	30.21	14.22

Protein Annotations

EnsemblPlants:Bra022308.1	EnsemblPlants:Bra022308.1-P	EnsemblPlantsGene:Bra022308	Gene3D:1.10.110.10	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:nsLTP2	PANTHER:PTHR33214	PANTHER:PTHR33214:SF19
PFAM:PF14368	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TMHMM:TMhelix
UniParc:UPI000254816A	UniProt:M4E0L1	MapMan:35.2	:	:	:

Description

AT3G18280 (E=5e-036) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Coordinates

chrA05:-:18508172..18508462

Molecular Weight (calculated)

10308.0 Da

IEP (calculated)

10.000

GRAVY (calculated)

0.409

Length

96 amino acids

Sequence
(BLAST)

1: MVMIKATWVS IFAIAAVLLV ILAPAAEAVT CSPMQLSPCA QAITSSSPPS ALCCAKLKEQ KPCLCGYMRN PSLRRFVSSP NARKVSNRCK LPIPRC

Best Arabidopsis Sequence Match ( AT3G18280.2 )
(BLAST)

001: MSKTTTHQKH ISINSETNKR SRRNMVMIKT TMVSLFALAA VLLMILAPAA EAVTCSPMQL SPCATAITSS SPPSALCCAK LKEQRPCLCG YMRNPSLRRF
101: VSTPNARKVS KSCKLPIPRC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP30]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.