Factsheet for PGSC0003DMT400056028

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02530.t01	Wine grape	plastid	56.52	64.2
KRG93187	Soybean	extracellular	59.78	56.7
VIT_14s0006g02550.t01	Wine grape	extracellular	56.52	56.52
CDY04317	Canola	extracellular	58.7	55.67
CDX77289	Canola	extracellular	58.7	55.67
CDY40833	Canola	extracellular	57.61	54.64
CDY32103	Canola	extracellular	57.61	54.64
Bra014154.1-P	Field mustard	extracellular	57.61	54.64
Bra032265.1-P	Field mustard	extracellular	56.52	53.61
CDY68337	Canola	extracellular	56.52	53.61
CDY16462	Canola	extracellular	56.52	53.61
KRH33571	Soybean	extracellular	57.61	53.0
KRH56524	Soybean	extracellular	56.52	52.0
PGSC0003DMT400014686	Potato	extracellular	52.17	51.61
AT1G48750.1	Thale cress	extracellular	52.17	51.06
Bra001701.1-P	Field mustard	extracellular	50.0	47.92
CDY51937	Canola	extracellular	50.0	47.92
CDX75963	Canola	extracellular	50.0	47.92
PGSC0003DMT400044139	Potato	extracellular	53.26	47.12
Bra022308.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.91	46.88
CDY24453	Canola	extracellular	48.91	46.88
CDX92224	Canola	extracellular	48.91	46.88
PGSC0003DMT400067824	Potato	extracellular	47.83	46.81
PGSC0003DMT400078574	Potato	extracellular	47.83	46.32
CDX95546	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.74	44.79
PGSC0003DMT400044140	Potato	extracellular	46.74	44.79
CDY48021	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.74	44.79
PGSC0003DMT400056046	Potato	extracellular	47.83	44.0
Bra021299.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	45.65	43.3
AT3G18280.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane, plastid	47.83	36.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400056028	EnsemblPlantsGene:PGSC0003DMG400021763	Gene3D:1.10.110.10	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:nsLTP2	PANTHER:PTHR33214	PANTHER:PTHR33214:SF19	PFAM:PF14368
PGSC:PGSC0003DMG400021763	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TMHMM:TMhelix	UniParc:UPI00029508B6
UniProt:M1BYV1	MapMan:35.2	:	:	:	:

Description

Nonspecific lipid transfer protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021763]

Coordinates

chr3:-:5151954..5152503

Molecular Weight (calculated)

9948.3 Da

IEP (calculated)

8.589

GRAVY (calculated)

0.250

Length

92 amino acids

Sequence
(BLAST)

1: MKQRSNFVAI FLVLFLSELL VTEAVTCSVT ELFPCAGAIM SSQPPSSACC IKLREQKPCL CGYLKNPSLK QYVNSPNAQR VAKTCGVSTP SC

Best Arabidopsis Sequence Match ( AT1G48750.1 )
(BLAST)

1: MVKVMWVSVL ALAAAILLLT VPVAEGVTCS PMQLASCAAA MTSSSPPSEA CCTKLREQQP CLCGYMRNPT LRQYVSSPNA RKVSNSCKIP SPSC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AQ3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.