Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119210.1.1 | Tomato | extracellular, nucleus | 93.55 | 93.55 |
| PGSC0003DMT400056028 | Potato | extracellular | 51.61 | 52.17 |
| PGSC0003DMT400067824 | Potato | extracellular | 50.54 | 50.0 |
| PGSC0003DMT400078574 | Potato | extracellular | 44.09 | 43.16 |
| PGSC0003DMT400044139 | Potato | extracellular | 45.16 | 40.38 |
| PGSC0003DMT400044140 | Potato | extracellular | 40.86 | 39.58 |
| PGSC0003DMT400056046 | Potato | extracellular | 39.78 | 37.0 |
Protein Annotations
| Gene3D:1.10.110.10 | EntrezGene:102584024 | MapMan:35.2 | EMBL:AB061266 | ProteinID:BAC23052 | ProteinID:BAC23052.1 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | RefSeq:NP_001275625.1 |
| PFAM:PF14368 | EnsemblPlantsGene:PGSC0003DMG400005731 | PGSC:PGSC0003DMG400005731 | EnsemblPlants:PGSC0003DMT400014686 | PANTHER:PTHR33214 | PANTHER:PTHR33214:SF11 |
| UniProt:Q8H9B7 | SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000AD0B9 |
| InterPro:nsLTP2 | SEG:seg | : | : | : | : |
Description
Lipid transfer protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005731]
Coordinates
chr3:+:58657834..58658595
Molecular Weight (calculated)
9880.4 Da
IEP (calculated)
9.472
GRAVY (calculated)
0.365
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MKTASKLAVL TVLVLLLVEA HISVAVTCSA IQLSPCLGAI TSNSAPSTLC CSRIREQKPC LCTYLKNPTL RNYVNSPGAK KVARTCGVPY PKC
001: MSKTTTHQKH ISINSETNKR SRRNMVMIKT TMVSLFALAA VLLMILAPAA EAVTCSPMQL SPCATAITSS SPPSALCCAK LKEQRPCLCG YMRNPSLRRF
101: VSTPNARKVS KSCKLPIPRC
101: VSTPNARKVS KSCKLPIPRC
Arabidopsis Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP30]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.