Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 extracellular: 24773703
msms PMID: 24773703 doi
T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson
Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056028 Potato extracellular 46.32 47.83
PGSC0003DMT400014686 Potato extracellular 43.16 44.09
PGSC0003DMT400044140 Potato extracellular 40.0 39.58
PGSC0003DMT400067824 Potato extracellular 37.89 38.3
PGSC0003DMT400044139 Potato extracellular 35.79 32.69
PGSC0003DMT400056046 Potato extracellular 32.63 31.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400078574EnsemblPlantsGene:PGSC0003DMG400030587Gene3D:1.10.110.10GO:GO:0006810GO:GO:0006869GO:GO:0008150
InterPro:Bifun_inhib/LTP/seed_sfInterPro:Bifunc_inhib/LTP/seed_storeInterPro:nsLTP2PANTHER:PTHR33214PANTHER:PTHR33214:SF11PFAM:PF14368
PGSC:PGSC0003DMG400030587SEG:segSignalP:SignalP-noTMSUPFAM:SSF47699UniParc:UPI0002966D4DUniProt:M1D0E2
MapMan:35.2:::::
Description
Nonspecific lipid-transfer protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030587]
Coordinates
chr5:-:3453699..3454490
Molecular Weight (calculated)
10418.0 Da
IEP (calculated)
9.501
GRAVY (calculated)
0.205
Length
95 amino acids
Sequence
(BLAST)
1: MTMRFVAIFA IVLFLVFVQE TKVTKAYVSC NPLQLSACAN AITSSTTPSS ICCSKLKEQR PCLCKYMKDP RLQKMISSPN AKKVASTCGS PFPNC
Best Arabidopsis Sequence Match ( AT3G18280.2 )
(BLAST)
001: MSKTTTHQKH ISINSETNKR SRRNMVMIKT TMVSLFALAA VLLMILAPAA EAVTCSPMQL SPCATAITSS SPPSALCCAK LKEQRPCLCG YMRNPSLRRF
101: VSTPNARKVS KSCKLPIPRC
Arabidopsis Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP30]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.