Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 10
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g086310.1.1 | Tomato | extracellular | 93.62 | 93.62 |
| VIT_14s0006g02530.t01 | Wine grape | plastid | 43.62 | 50.62 |
| PGSC0003DMT400014686 | Potato | extracellular | 50.0 | 50.54 |
| CDX92224 | Canola | extracellular | 51.06 | 50.0 |
| CDY24453 | Canola | extracellular | 50.0 | 48.96 |
| Bra022308.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 50.0 | 48.96 |
| CDY51937 | Canola | extracellular | 48.94 | 47.92 |
| CDX75963 | Canola | extracellular | 48.94 | 47.92 |
| Bra001701.1-P | Field mustard | extracellular | 48.94 | 47.92 |
| PGSC0003DMT400056028 | Potato | extracellular | 46.81 | 47.83 |
| CDX95546 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 47.87 | 46.88 |
| CDY48021 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 47.87 | 46.88 |
| AT1G48750.1 | Thale cress | extracellular | 44.68 | 44.68 |
| Bra021299.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 45.74 | 44.33 |
| KRG93187 | Soybean | extracellular | 45.74 | 44.33 |
| KRH33571 | Soybean | extracellular | 46.81 | 44.0 |
| VIT_14s0006g02550.t01 | Wine grape | extracellular | 42.55 | 43.48 |
| CDY40833 | Canola | extracellular | 44.68 | 43.3 |
| CDY68337 | Canola | extracellular | 44.68 | 43.3 |
| CDY32103 | Canola | extracellular | 44.68 | 43.3 |
| CDY04317 | Canola | extracellular | 44.68 | 43.3 |
| Bra032265.1-P | Field mustard | extracellular | 44.68 | 43.3 |
| PGSC0003DMT400044139 | Potato | extracellular | 46.81 | 42.31 |
| KRH56524 | Soybean | extracellular | 44.68 | 42.0 |
| CDX77289 | Canola | extracellular | 42.55 | 41.24 |
| Bra014154.1-P | Field mustard | extracellular | 42.55 | 41.24 |
| CDY16462 | Canola | extracellular | 41.49 | 40.21 |
| PGSC0003DMT400078574 | Potato | extracellular | 38.3 | 37.89 |
| AT3G18280.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane, plastid | 47.87 | 37.5 |
| PGSC0003DMT400044140 | Potato | extracellular | 34.04 | 33.33 |
| PGSC0003DMT400056046 | Potato | extracellular | 32.98 | 31.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067824 | EnsemblPlantsGene:PGSC0003DMG400026381 | Gene3D:1.10.110.10 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:nsLTP2 | PANTHER:PTHR33214 | PANTHER:PTHR33214:SF19 | PFAM:PF14368 |
| PGSC:PGSC0003DMG400026381 | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | UniParc:UPI000294D586 | UniProt:M1CHX3 |
| MapMan:35.2 | : | : | : | : | : |
Description
Lipid transfer protein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026381]
Coordinates
chr2:-:41504972..41505464
Molecular Weight (calculated)
9766.0 Da
IEP (calculated)
8.079
GRAVY (calculated)
0.331
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MTKVCSFVAV MLVMVLVCDQ FGASEAVTCS ASQLSPCVGA IQGGTAPSQD CCARLKSQQP CICGFMKDPN LKQYVNSPNA RKVAGQCGVS IPSC
001: MSKTTTHQKH ISINSETNKR SRRNMVMIKT TMVSLFALAA VLLMILAPAA EAVTCSPMQL SPCATAITSS SPPSALCCAK LKEQRPCLCG YMRNPSLRRF
101: VSTPNARKVS KSCKLPIPRC
101: VSTPNARKVS KSCKLPIPRC
Arabidopsis Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP30]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.