Factsheet for PGSC0003DMT400056046

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g034390.1.1	Tomato	extracellular	87.0	91.58
PGSC0003DMT400056028	Potato	extracellular	44.0	47.83
Os10t0504900-01	Rice	extracellular	35.0	42.68
PGSC0003DMT400014686	Potato	extracellular	37.0	39.78
EER91405	Sorghum	extracellular	37.0	37.76
PGSC0003DMT400044139	Potato	extracellular	39.0	37.5
TraesCS3D01G023400.1	Wheat	plastid	31.0	36.9
Os10t0505700-01	Rice	extracellular, nucleus, plastid	33.0	36.26
TraesCS1D01G163900.1	Wheat	unclear	33.0	36.26
TraesCS7B01G313000.1	Wheat	extracellular	34.0	36.17
Os10t0505500-01	Rice	extracellular	34.0	36.17
Os10t0504650-00	Rice	endoplasmic reticulum, extracellular, plasma membrane	36.0	36.0
TraesCS5A01G554400.1	Wheat	extracellular, plastid	23.0	35.94
TraesCS1B01G188600.1	Wheat	extracellular	34.0	35.79
TraesCS1A01G175100.1	Wheat	extracellular	34.0	35.79
TraesCSU01G032800.1	Wheat	extracellular	34.0	35.79
TraesCS1B01G189600.1	Wheat	extracellular	34.0	35.79
TraesCS1D01G164000.1	Wheat	extracellular	34.0	35.79
PGSC0003DMT400044140	Potato	extracellular	34.0	35.42
TraesCSU01G032900.1	Wheat	unclear	34.0	35.42
TraesCS1A01G175200.1	Wheat	extracellular, plastid	30.0	35.29
TraesCS1B01G189400.1	Wheat	unclear	32.0	35.16
EER91406	Sorghum	plasma membrane	33.0	34.74
TraesCS5B01G531200.1	Wheat	extracellular, vacuole	34.0	34.69
TraesCS3B01G022200.1	Wheat	extracellular	34.0	34.69
Zm00001d013907_P001	Maize	plastid	33.0	34.38
TraesCS4B01G393300.1	Wheat	extracellular, unclear	33.0	34.38
TraesCS5A01G554300.1	Wheat	extracellular	33.0	34.38
TraesCS7B01G312800.1	Wheat	extracellular	32.0	34.04
Os06t0705400-02	Rice	extracellular, plasma membrane	32.0	34.04
TraesCSU01G033100.1	Wheat	extracellular	27.0	33.33
PGSC0003DMT400067824	Potato	extracellular	31.0	32.98
TraesCS4B01G393400.1	Wheat	extracellular	31.0	32.98
OQU83333	Sorghum	endoplasmic reticulum, extracellular	30.0	32.97
OQU75578	Sorghum	endoplasmic reticulum, extracellular	30.0	32.97
EES08427	Sorghum	endoplasmic reticulum, extracellular	30.0	32.97
PGSC0003DMT400078574	Potato	extracellular	31.0	32.63
Os03t0111300-01	Rice	extracellular	31.0	32.29
TraesCSU01G033800.1	Wheat	extracellular	30.0	32.26
Zm00001d036452_P001	Maize	extracellular	30.0	31.91
HORVU4Hr1G089490.1	Barley	extracellular	29.0	31.87
Zm00001d027332_P001	Maize	extracellular	31.0	31.63
EES13181	Sorghum	extracellular	28.0	31.46
TraesCS2B01G537400.1	Wheat	extracellular	31.0	31.31
TraesCS4B01G392800.1	Wheat	extracellular	29.0	31.18
HORVU4Hr1G089500.1	Barley	extracellular	31.0	31.0
Os10t0505000-01	Rice	extracellular	31.0	31.0
TraesCS5B01G531100.1	Wheat	extracellular, unclear	28.0	30.43
Zm00001d007299_P001	Maize	extracellular	30.0	30.3
Os11t0620300-01	Rice	extracellular	33.0	30.0
Zm00001d052759_P001	Maize	extracellular	29.0	29.9
TraesCSU01G033000.1	Wheat	extracellular	27.0	29.67
OQU75598	Sorghum	extracellular	27.0	29.67
OQU83334	Sorghum	extracellular	27.0	29.67
TraesCS2D01G510800.1	Wheat	extracellular	29.0	29.0
HORVU2Hr1G108660.1	Barley	extracellular	27.0	28.72
OQU93402	Sorghum	cytosol	33.0	26.19
HORVU1Hr1G046370.1	Barley	extracellular	33.0	24.81
TraesCS4A01G424200.1	Wheat	extracellular	22.0	24.72
TraesCS4A01G424100.1	Wheat	extracellular	22.0	24.72
TraesCS4A01G424000.1	Wheat	extracellular	22.0	24.72
HORVU1Hr1G046400.1	Barley	cytosol, plasma membrane, plastid	29.0	23.77
TraesCS7D01G406300.1	Wheat	endoplasmic reticulum	32.0	23.19
OQU77036	Sorghum	extracellular	33.0	19.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400056046	EnsemblPlantsGene:PGSC0003DMG400021773	Gene3D:1.10.110.10	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:nsLTP2	PANTHER:PTHR33214	PANTHER:PTHR33214:SF19	PFAM:PF14368
PGSC:PGSC0003DMG400021773	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699	TMHMM:TMhelix
UniParc:UPI000295C2C0	UniProt:M1BYW0	MapMan:35.2	:	:	:

Description

Nonspecific lipid transfer protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021773]

Coordinates

chr3:-:5197700..5198314

Molecular Weight (calculated)

10949.7 Da

IEP (calculated)

8.075

GRAVY (calculated)

0.554

Length

100 amino acids

Sequence
(BLAST)

1: MKKCIISCVA IFLVLFLGEL LVTEAQTCNV NELVSPCFAT FAFSSPPSSA CCTKLREQQP CLCEYIKNPA YAQYLNSSLI SRVLIACKIP VPKCPPSPMI

Best Arabidopsis Sequence Match ( AT1G48750.1 )
(BLAST)

1: MVKVMWVSVL ALAAAILLLT VPVAEGVTCS PMQLASCAAA MTSSSPPSEA CCTKLREQQP CLCGYMRNPT LRQYVSSPNA RKVSNSCKIP SPSC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AQ3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.