Factsheet for TraesCS1D01G163900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 1
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G189400.1	Wheat	unclear	90.11	90.11
TraesCS1A01G175200.1	Wheat	extracellular, plastid	80.22	85.88
Os10t0505700-01	Rice	extracellular, nucleus, plastid	64.84	64.84
HORVU1Hr1G046400.1	Barley	cytosol, plasma membrane, plastid	82.42	61.48
Zm00001d013907_P001	Maize	plastid	64.84	61.46
EER91405	Sorghum	extracellular	63.74	59.18
EER91406	Sorghum	plasma membrane	56.04	53.68
TraesCS3D01G023400.1	Wheat	plastid	48.35	52.38
TraesCS1D01G164000.1	Wheat	extracellular	52.75	50.53
KRH01717	Soybean	extracellular	42.86	41.05
VIT_17s0000g03280.t01	Wine grape	extracellular	40.66	40.22
VIT_14s0006g02530.t01	Wine grape	plastid	34.07	38.27
KRH70406	Soybean	extracellular	39.56	37.89
Solyc03g034390.1.1	Tomato	extracellular	37.36	35.79
TraesCS1D01G381100.1	Wheat	extracellular	36.26	34.38
VIT_14s0006g02550.t01	Wine grape	extracellular	34.07	33.7
TraesCS1D01G380800.1	Wheat	extracellular	35.16	33.33
TraesCS2D01G510800.1	Wheat	extracellular	36.26	33.0
PGSC0003DMT400056046	Potato	extracellular	36.26	33.0
KRH48557	Soybean	extracellular	32.97	32.26
TraesCS1D01G381300.1	Wheat	extracellular	34.07	31.63
TraesCS3D01G261600.1	Wheat	extracellular	32.97	31.58
KRH39147	Soybean	extracellular	31.87	31.18
TraesCS1D01G381600.1	Wheat	extracellular	32.97	30.61
KRH56524	Soybean	extracellular	32.97	30.0
KRG93187	Soybean	extracellular	30.77	28.87
TraesCS1D01G381200.1	Wheat	extracellular	30.77	28.57
KRH33571	Soybean	extracellular	30.77	28.0
TraesCS7D01G406300.1	Wheat	endoplasmic reticulum	37.36	24.64

Protein Annotations

EnsemblPlants:TraesCS1D01G163900.1	EnsemblPlantsGene:TraesCS1D01G163900	Gene3D:1.10.110.10	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:nsLTP2	PANTHER:PTHR33214	PANTHER:PTHR33214:SF10	PFAM:PF14368
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF47699	TIGR:cd01959	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr1D:+:234528369..234528644

Molecular Weight (calculated)

9175.3 Da

IEP (calculated)

9.548

GRAVY (calculated)

0.400

Length

91 amino acids

Sequence
(BLAST)

1: MAKAAAMLVL VALVVAAMAT GGAAQCNAGS LAVCTSPIIS GTPPSKTCCN NLKSQRGCFC KFARNPAYSS YINSRNAGKT LTSCGIAVPK C

Best Arabidopsis Sequence Match ( AT5G38170.1 )
(BLAST)

001: MKFTALVFIV FVVGVMVSPV SIRATEVKLS GGEADVTCDA VQLSSCATPM LTGVPPSTEC CGKLKEQQPC FCTYIKDPRY SQYVGSANAK KTLATCGVPY
101: PTC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.