Factsheet for Zm00001d013907_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91405	Sorghum	extracellular	78.12	76.53
TraesCS1B01G189400.1	Wheat	unclear	64.58	68.13
Os10t0505700-01	Rice	extracellular, nucleus, plastid	64.58	68.13
TraesCS1D01G163900.1	Wheat	unclear	61.46	64.84
TraesCS1A01G175200.1	Wheat	extracellular, plastid	56.25	63.53
Zm00001d027332_P001	Maize	extracellular	57.29	56.12
HORVU1Hr1G046400.1	Barley	cytosol, plasma membrane, plastid	60.42	47.54
KRH01717	Soybean	extracellular	46.88	47.37
Zm00001d052759_P001	Maize	extracellular	46.88	46.39
KRH70406	Soybean	extracellular	44.79	45.26
VIT_14s0006g02530.t01	Wine grape	plastid	37.5	44.44
Zm00001d038911_P001	Maize	extracellular	43.75	41.58
VIT_17s0000g03280.t01	Wine grape	extracellular	38.54	40.22
Zm00001d038913_P001	Maize	endoplasmic reticulum, extracellular	40.62	39.8
Zm00001d036452_P001	Maize	extracellular	38.54	39.36
KRH48557	Soybean	extracellular	37.5	38.71
Zm00001d037677_P001	Maize	endoplasmic reticulum, plasma membrane	40.62	38.61
KRH39147	Soybean	extracellular	36.46	37.63
Zm00001d007299_P001	Maize	extracellular	38.54	37.37
KRG93187	Soybean	extracellular	36.46	36.08
VIT_14s0006g02550.t01	Wine grape	extracellular	34.38	35.87
Solyc03g034390.1.1	Tomato	extracellular	35.42	35.79
KRH33571	Soybean	extracellular	35.42	34.0
KRH56524	Soybean	extracellular	35.42	34.0
PGSC0003DMT400056046	Potato	extracellular	34.38	33.0

Protein Annotations

EnsemblPlants:Zm00001d013907_P001	EnsemblPlants:Zm00001d013907_T001	EnsemblPlantsGene:Zm00001d013907	EntrezGene:103626125	Gene3D:1.10.110.10	GO:GO:0006810
GO:GO:0006869	GO:GO:0008150	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:nsLTP2	PANTHER:PTHR33214
PANTHER:PTHR33214:SF10	PFAM:PF14368	ProteinID:AQK64778.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499
SUPFAM:SSF47699	TMHMM:TMhelix	UniParc:UPI00018C6752	UniProt:A0A1D6GNG8	MapMan:35.2	:

Description

Nonspecific lipid-transfer protein

Coordinates

chr5:+:24372950..24373240

Molecular Weight (calculated)

9563.6 Da

IEP (calculated)

8.402

GRAVY (calculated)

0.585

Length

96 amino acids

Sequence
(BLAST)

1: MARAVAMLVA LALALALIVA ASAGGAAAQQ CSAAQLAACA PAIISGSPPT ASCCSNLRAQ EPCFCQYARN PAYSSYINSP NARRTLTSCG IAVPSC

Best Arabidopsis Sequence Match ( AT5G38170.1 )
(BLAST)

001: MKFTALVFIV FVVGVMVSPV SIRATEVKLS GGEADVTCDA VQLSSCATPM LTGVPPSTEC CGKLKEQQPC FCTYIKDPRY SQYVGSANAK KTLATCGVPY
101: PTC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.