Factsheet for TraesCSU01G032900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G554300.1	Wheat	extracellular	94.79	94.79
TraesCS4B01G393300.1	Wheat	extracellular, unclear	92.71	92.71
TraesCS5B01G531200.1	Wheat	extracellular, vacuole	92.71	90.82
TraesCSU01G033100.1	Wheat	extracellular	63.54	75.31
TraesCSU01G032800.1	Wheat	extracellular	71.88	72.63
TraesCSU01G033800.1	Wheat	extracellular	69.79	72.04
TraesCSU01G033000.1	Wheat	extracellular	66.67	70.33
HORVU4Hr1G089500.1	Barley	extracellular	66.67	64.0
Zm00001d027332_P001	Maize	extracellular	56.25	55.1
Os03t0111300-01	Rice	extracellular	52.08	52.08
KRH01717	Soybean	extracellular	41.67	42.11
KRH70406	Soybean	extracellular	40.62	41.05
VIT_14s0006g02530.t01	Wine grape	plastid	34.38	40.74
OQU93402	Sorghum	cytosol	53.12	40.48
VIT_17s0000g03280.t01	Wine grape	extracellular	36.46	38.04
Solyc03g034390.1.1	Tomato	extracellular	36.46	36.84
VIT_14s0006g02550.t01	Wine grape	extracellular	34.38	35.87
KRH48557	Soybean	extracellular	33.33	34.41
KRH39147	Soybean	extracellular	33.33	34.41
PGSC0003DMT400056046	Potato	extracellular	35.42	34.0
KRH56524	Soybean	extracellular	33.33	32.0
KRH33571	Soybean	extracellular	32.29	31.0
KRG93187	Soybean	extracellular	31.25	30.93

Protein Annotations

EnsemblPlants:TraesCSU01G032900.1	EnsemblPlantsGene:TraesCSU01G032900	Gene3D:1.10.110.10	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:nsLTP2	PANTHER:PTHR33214	PANTHER:PTHR33214:SF10	PFAM:PF14368
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF47699	TIGR:cd01959	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chrUn:+:29798529..29799033

Molecular Weight (calculated)

9834.0 Da

IEP (calculated)

8.406

GRAVY (calculated)

0.303

Length

96 amino acids

Sequence
(BLAST)

1: MASMGKKQVV AALMLVLVVL AAAPGGAHAA CQASQLAVCA SAILSGAKPS GECCGNLRAQ QPCFCQYAKD PTYGQYIRSP HARDTLQSCG LAVPHC

Best Arabidopsis Sequence Match ( AT5G38170.1 )
(BLAST)

001: MKFTALVFIV FVVGVMVSPV SIRATEVKLS GGEADVTCDA VQLSSCATPM LTGVPPSTEC CGKLKEQQPC FCTYIKDPRY SQYVGSANAK KTLATCGVPY
101: PTC

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.