Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G393400.1 | Wheat | extracellular | 73.0 | 77.66 |
| TraesCSU01G032800.1 | Wheat | extracellular | 70.0 | 73.68 |
| TraesCS5A01G554300.1 | Wheat | extracellular | 65.0 | 67.71 |
| TraesCSU01G032900.1 | Wheat | unclear | 64.0 | 66.67 |
| TraesCS4B01G393300.1 | Wheat | extracellular, unclear | 64.0 | 66.67 |
| TraesCS5B01G531200.1 | Wheat | extracellular, vacuole | 65.0 | 66.33 |
| HORVU4Hr1G089490.1 | Barley | extracellular | 55.0 | 60.44 |
| Zm00001d027332_P001 | Maize | extracellular | 48.0 | 48.98 |
| HORVU0Hr1G001480.2 | Barley | cytosol | 22.0 | 45.83 |
| Os03t0111300-01 | Rice | extracellular | 43.0 | 44.79 |
| KRH70406 | Soybean | extracellular | 42.0 | 44.21 |
| KRH48557 | Soybean | extracellular | 39.0 | 41.94 |
| VIT_14s0006g02530.t01 | Wine grape | plastid | 33.0 | 40.74 |
| HORVU2Hr1G108660.1 | Barley | extracellular | 38.0 | 40.43 |
| VIT_17s0000g03280.t01 | Wine grape | extracellular | 37.0 | 40.22 |
| KRH39147 | Soybean | extracellular | 37.0 | 39.78 |
| KRH01717 | Soybean | extracellular | 36.0 | 37.89 |
| HORVU1Hr1G083160.1 | Barley | extracellular | 36.0 | 37.5 |
| OQU93402 | Sorghum | cytosol | 47.0 | 37.3 |
| HORVU1Hr1G083170.1 | Barley | extracellular | 35.0 | 36.46 |
| VIT_14s0006g02550.t01 | Wine grape | extracellular | 33.0 | 35.87 |
| HORVU1Hr1G046400.1 | Barley | cytosol, plasma membrane, plastid | 43.0 | 35.25 |
| KRG93187 | Soybean | extracellular | 34.0 | 35.05 |
| Solyc03g034390.1.1 | Tomato | extracellular | 32.0 | 33.68 |
| KRH56524 | Soybean | extracellular | 33.0 | 33.0 |
| KRH33571 | Soybean | extracellular | 33.0 | 33.0 |
| HORVU1Hr1G046370.1 | Barley | extracellular | 43.0 | 32.33 |
| HORVU1Hr1G083210.1 | Barley | plastid | 39.0 | 31.45 |
| PGSC0003DMT400056046 | Potato | extracellular | 31.0 | 31.0 |
| HORVU1Hr1G083180.1 | Barley | endoplasmic reticulum, extracellular | 37.0 | 30.08 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G089500.1 | EnsemblPlantsGene:HORVU4Hr1G089500 | Gene3D:1.10.110.10 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:nsLTP2 | PANTHER:PTHR33214 | PANTHER:PTHR33214:SF10 | PFAM:PF14368 |
| SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TMHMM:TMhelix | UniParc:UPI00029552D3 |
| UniProt:M0WPC3 | MapMan:35.1 | : | : | : | : |
Description
Probable non-specific lipid-transfer protein [Source:UniProtKB/TrEMBL;Acc:M0WPC3]
Coordinates
chrchr4H:-:642559204..642559830
Molecular Weight (calculated)
10243.7 Da
IEP (calculated)
7.241
GRAVY (calculated)
0.401
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MAMAMAMAMR KEAAVAVMMV MVVTLAAGAD AGAACEPAQL AVCASAILGG TKPSGECCGN LRAQQGCLCQ YVKDPNYGHY VSSPHARDTL NLCGIPVPHC
001: MKFTALVFIV FVVGVMVSPV SIRATEVKLS GGEADVTCDA VQLSSCATPM LTGVPPSTEC CGKLKEQQPC FCTYIKDPRY SQYVGSANAK KTLATCGVPY
101: PTC
101: PTC
Arabidopsis Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF39]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.