CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11838	Soybean	vacuole	76.48	56.14
Solyc04g009630.2.1	Tomato	extracellular	63.98	46.53
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	65.47	44.14
KRH36850	Soybean	nucleus	77.75	40.91
KRH11839	Soybean	extracellular	79.45	40.02
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	66.1	34.44
PGSC0003DMT400041356	Potato	extracellular, vacuole	63.98	33.71
Bra006111.1-P	Field mustard	extracellular, vacuole	61.86	32.77
AT5G11720.1	Thale cress	vacuole	62.5	32.71
CDX78437	Canola	extracellular, vacuole	61.65	32.62
CDX70414	Canola	extracellular, plastid, vacuole	61.44	32.29
HORVU2Hr1G120870.1	Barley	mitochondrion	45.55	31.3
OQU76881	Sorghum	extracellular, vacuole	54.87	30.87
TraesCS2A01G549700.1	Wheat	cytosol, extracellular, vacuole	16.1	30.16
Zm00001d036608_P003	Maize	extracellular	54.24	29.09
TraesCS2A01G548700.1	Wheat	mitochondrion	47.46	28.61
Os06t0675700-01	Rice	nucleus	52.54	28.02
Os06t0676700-01	Rice	plastid	51.69	27.54
TraesCS7A01G464200.2	Wheat	endoplasmic reticulum	51.06	27.2
TraesCS2A01G549600.1	Wheat	extracellular, vacuole	44.28	26.97
TraesCS2A01G548900.1	Wheat	unclear	47.88	26.1
TraesCS2D01G550400.1	Wheat	endoplasmic reticulum	47.88	26.1
TraesCS2D01G550600.1	Wheat	endoplasmic reticulum	47.67	25.98
TraesCS2B01G580200.1	Wheat	endoplasmic reticulum	47.67	25.98
TraesCS7B01G364700.1	Wheat	mitochondrion, plastid, vacuole	50.85	25.86
TraesCS2D01G550500.1	Wheat	golgi	47.03	25.72
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	47.03	25.64
TraesCS7D01G451800.2	Wheat	unclear	50.64	25.62
HORVU7Hr1G106540.2	Barley	cytosol	50.42	25.54
TraesCS2B01G580300.1	Wheat	extracellular, plastid, vacuole	48.09	25.51
TraesCS2D01G550700.1	Wheat	cytosol, extracellular, vacuole	47.67	25.28
HORVU2Hr1G120920.3	Barley	endoplasmic reticulum, extracellular, vacuole	46.82	25.26
TraesCS2A01G549500.1	Wheat	golgi	45.97	25.14
TraesCS2A01G548600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	45.97	25.14
TraesCS2A01G548500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	45.97	25.14
HORVU2Hr1G120880.1	Barley	mitochondrion	47.88	24.49
KRH75375	Soybean	endoplasmic reticulum	47.03	23.92
KRH45278	Soybean	endoplasmic reticulum	46.82	23.87
KRH35960	Soybean	endoplasmic reticulum	46.4	23.68
TraesCS2A01G549800.1	Wheat	extracellular, vacuole	28.39	22.75
KRH53951	Soybean	cytosol, nucleus, vacuole	23.94	13.7
KRH63987	Soybean	endoplasmic reticulum	26.06	13.46
KRH62685	Soybean	nucleus	27.97	12.54
KRH66765	Soybean	plastid	15.68	8.43
GSMUA_Achr3P23330_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	2.54	7.5
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	0.0	0.0

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:3.20.20.80	MapMan:50.3.2	UniProt:A0A0R0G0B7	EMBL:ACUP02009241	EnsemblPlantsGene:GLYMA_15G133800
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS
InterPro:Glyco_hydro_31_CS	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	EnsemblPlants:KRH11840	ProteinID:KRH11840
ProteinID:KRH11840.1	PFAM:PF01055	ScanProsite:PS00129	ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF121
SUPFAM:SSF51011	SUPFAM:SSF51445	UniParc:UPI0006EDA44C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:10754838..10756823

Molecular Weight (calculated)

52711.8 Da

IEP (calculated)

7.674

GRAVY (calculated)

-0.229

Length

472 amino acids

Sequence
(BLAST)

001: MDAYKDFTFD PINFPIERMK NFVDTLHQNG QKYVPIVDPG IGINDTYETY PRGLKADVYI KRNGTNYLGK VWPGPVYLPD FLNPTTQDFW GGEIKLFRDL
101: LPVDGIWLDM NELANFIASP IENSTLDNPP YKITHGINDR TVPPTSLHFE SKATNKALTN ITGKRPFILS RSTFVSSGKY VAHWTGDNAA SWNDLAYSIR
201: AILNSGIFGI PMVGADICGF LGSTNEELCR RWTQLGAFYP FARDHSDKNS NRQELYLWDS VADSAKKVLG LRYRLLPYLY TLMMSQLNEI SSQFLLGKGV
301: LVSPVLKSGA TTVDTYFPKG NWFDLFNFSN SVNGESGKNV TLDAPSDHIN VHVGEGNILA MQGEAMTTEA ARNTTFQLDI AGTLVSFNAT LLNTTSVLVT
401: SKVTNGAFAL DKKWILEKVT VLGIPKQSKN LARKNLKFVK TQNDTSSQFD IVEVSKLSQL IGEDFKMDIK IR

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.