CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
golgi 1
mitochondrion 3
vacuole 1
extracellular 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11838	Soybean	vacuole	60.94	88.8
KRH36850	Soybean	nucleus	83.78	87.51
KRH11840	Soybean	cytosol, nucleus	40.02	79.45
Solyc04g009630.2.1	Tomato	extracellular	47.39	68.41
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	49.52	66.29
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	64.03	66.23
PGSC0003DMT400041356	Potato	extracellular, vacuole	60.94	63.73
AT5G11720.1	Thale cress	vacuole	58.91	61.2
CDX78437	Canola	extracellular, vacuole	57.84	60.76
Bra006111.1-P	Field mustard	extracellular, vacuole	57.74	60.72
CDX70414	Canola	extracellular, plastid, vacuole	58.16	60.69
OQU76881	Sorghum	extracellular, vacuole	51.12	57.09
Zm00001d036608_P003	Maize	extracellular	52.29	55.68
Os06t0675700-01	Rice	nucleus	52.19	55.25
Os06t0676700-01	Rice	plastid	51.55	54.51
TraesCS2A01G549800.1	Wheat	extracellular, vacuole	34.26	54.5
TraesCS7A01G464200.2	Wheat	endoplasmic reticulum	50.8	53.72
HORVU2Hr1G120870.1	Barley	mitochondrion	39.17	53.42
TraesCS7B01G364700.1	Wheat	mitochondrion, plastid, vacuole	51.55	52.05
TraesCS7D01G451800.2	Wheat	unclear	51.65	51.88
TraesCS2D01G550600.1	Wheat	endoplasmic reticulum	47.6	51.5
TraesCS2D01G550500.1	Wheat	golgi	47.39	51.45
HORVU7Hr1G106540.2	Barley	cytosol	51.12	51.39
TraesCS2A01G548900.1	Wheat	unclear	47.39	51.27
TraesCS2B01G580200.1	Wheat	endoplasmic reticulum	47.28	51.15
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	47.28	51.15
TraesCS2D01G550700.1	Wheat	cytosol, extracellular, vacuole	48.56	51.12
TraesCS2A01G549500.1	Wheat	golgi	47.07	51.1
TraesCS2D01G550400.1	Wheat	endoplasmic reticulum	47.07	50.92
TraesCS2A01G548600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.85	50.87
TraesCS2A01G548500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.85	50.87
TraesCS2B01G580300.1	Wheat	extracellular, plastid, vacuole	48.13	50.67
TraesCS2A01G548700.1	Wheat	mitochondrion	42.26	50.57
HORVU2Hr1G120920.3	Barley	endoplasmic reticulum, extracellular, vacuole	47.17	50.51
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	13.02	49.8
TraesCS2A01G549600.1	Wheat	extracellular, vacuole	40.88	49.42
HORVU2Hr1G120880.1	Barley	mitochondrion	48.03	48.75
TraesCS2A01G549700.1	Wheat	cytosol, extracellular, vacuole	12.06	44.84
KRH35960	Soybean	endoplasmic reticulum	44.18	44.76
KRH75375	Soybean	endoplasmic reticulum	43.65	44.07
KRH45278	Soybean	endoplasmic reticulum	43.33	43.84
GSMUA_Achr3P23330_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	7.15	41.88
KRH63987	Soybean	endoplasmic reticulum	24.55	25.16
KRH53951	Soybean	cytosol, nucleus, vacuole	21.66	24.61
KRH62685	Soybean	nucleus	22.95	20.42
KRH66765	Soybean	plastid	15.37	16.4

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	EMBL:ACUP02009241	EnsemblPlantsGene:GLYMA_15G133700
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS
InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	UniProt:I1MG74	InterPro:IPR013780	EnsemblPlants:KRH11839
ProteinID:KRH11839	ProteinID:KRH11839.1	PFAM:PF01055	PFAM:PF13802	PFAM:PF16863	ScanProsite:PS00129
ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF121	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650
UniParc:UPI000295233C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:10744186..10748830

Molecular Weight (calculated)

104954.0 Da

IEP (calculated)

7.150

GRAVY (calculated)

-0.187

Length

937 amino acids

Sequence
(BLAST)

001: MRNNSEVNLP RLHHAIISYP YSHTHFNTNT MATRWRVTKA TATIFSVFLI FCSSFSSLEA TPVGYGYTIS TVYNFPITNS LTANLDLIKP SSVFGPDIPH
101: LSLTASFENK DRLRVRITDS NHQRWEIPQE VIPRGSSFQY YPLRSLNSKQ GSPQKKHSFS LTHPNSDLVF TLHNTTPFGF TVSRKSSNDV LFNTAPNPSN
201: PETFLIFKDQ YLQLSSSLPS QRASLFGLGE HTKSSFKLRP NQTLTLWTAD IASANLDLNL YGSHPFYLDV RSSSFDGKVK AGTTHGVLLF NSNGMDIMYG
301: GDQITYKVIG GVFDFYFFVG STPELVLEQY TEFIGRPAPM PYWSFGFHQC RYGYKNVSDL QDVVANYAKA SIPLEVMWTD IDYMDAYKDF TFDPINFPLD
401: KMRSFVDTLH KNGQKYVLIV DPGISVNETY ATYIRGLQAD VYIKRNGSNY LGKVWPGPVY YPDFLNPRSQ AFWGREIKLF RDLLPIDGLW IDMNELSNFI
501: TSPPIPFSNL DNPPYKINNV GDQHSINDRT VPATSLHFGN ITEYNVHNLY GLLESKVTNK ALKDITGKRP FILSRSTFVS SGKYAAHWTG DNAATWNDLA
601: YSIPAILNSG IFGIPMVGAD ICGFGGNTTE ELCRRWIQLG AFYPFARDHS DKNSNRQELY LWDSVADSAK KVLGLRYRLL PYLYTLMYEA HTKGTPIARP
701: LFFSFPEDVT TYEISSQFLL GKGVLVSPVL QSGATSVVAY FPKGSWFDLF NVSNSVNAES GKYVTLDAPS DHINVHVGEG NILALQGEAI TTVAARKTAF
801: QLVVVISNSG SSFGQVYLDD GEALDIAGVN DQWTLASFYG ALHNNSVLVT SKVTNARFAL DQRWIIDNVS FLGIPKNKRF NGMDLAGNEL KIVNGMDSMR
901: TAVVKSEFDS SSQFVNVQVS KLSLPIGEEF KLEIEIK

Best Arabidopsis Sequence Match ( AT5G11720.1 )
(BLAST)

001: MSSLHWFPNI FIVVVVFFSL RSSQVVLEEE ESTVVGYGYV VRSVGVDSNR QVLTAKLDLI KPSSVYAPDI KSLNLHVSLE TSERLRIRIT DSSQQRWEIP
101: ETVIPRAGNH SPRRFSTEED GGNSPENNFL ADPSSDLVFT LHNTTPFGFS VSRRSSGDIL FDTSPDSSDS NTYFIFKDQF LQLSSALPEN RSNLYGIGEH
201: TKRSFRLIPG ETMTLWNADI GSENPDVNLY GSHPFYMDVR GSKGNEEAGT THGVLLLNSN GMDVKYEGHR ITYNVIGGVI DLYVFAGPSP EMVMNQYTEL
301: IGRPAPMPYW SFGFHQCRYG YKNVSDLEYV VDGYAKAGIP LEVMWTDIDY MDGYKDFTLD PVNFPEDKMQ SFVDTLHKNG QKYVLILDPG IGVDSSYGTY
401: NRGMEADVFI KRNGEPYLGE VWPGKVYFPD FLNPAAATFW SNEIKMFQEI LPLDGLWIDM NELSNFITSP LSSGSSLDDP PYKINNSGDK RPINNKTVPA
501: TSIHFGNISE YDAHNLYGLL EAKATHQAVV DITGKRPFIL SRSTFVSSGK YTAHWTGDNA AKWEDLAYSI PGILNFGLFG IPMVGADICG FSHDTTEELC
601: RRWIQLGAFY PFARDHSSLG TARQELYLWD SVASSARKVL GLRMRLLPHL YTLMYEAHVS GNPIARPLFF SFPQDTKTYE IDSQFLIGKS IMVSPALKQG
701: AVAVDAYFPA GNWFDLFNYS FAVGGDSGKH VRLDTPADHV NVHVREGSIV AMQGEALTTR DARKTPYQLL VVASRLENIS GELFLDDGEN LRMGAGGGNR
801: DWTLVKFRCY VTGKSVVLRS EVVNPEYASK MKWSIGKVTF VGFENVENVK TYEVRTSERL RSPRISLIKT VSDNDDPRFL SVEVSKLSLL VGKKFEMRLR
901: LT

Arabidopsis Description

AT5g11720/T22P22_110 [Source:UniProtKB/TrEMBL;Acc:Q9LYF8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.