CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 4
vacuole 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g01410.t01	Wine grape	plastid	74.83	74.55
Bra028332.1-P	Field mustard	cytosol, nucleus, peroxisome	68.09	72.5
KXG34976	Sorghum	cytosol	58.69	70.95
CDY56225	Canola	plasma membrane, plastid, vacuole	36.94	69.96
Solyc08g075530.2.1	Tomato	plastid	70.94	69.88
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	61.82	68.17
AT3G23640.3	Thale cress	plastid	68.57	68.11
TraesCS7A01G134500.1	Wheat	extracellular	63.15	67.72
Bra028330.1-P	Field mustard	cytosol	57.27	67.15
Zm00001d019497_P004	Maize	cytosol, nucleus, plastid	62.39	66.3
CDY18102	Canola	plastid	66.38	65.45
Os07t0420700-01	Rice	plasma membrane	64.01	65.44
TraesCS1D01G239100.1	Wheat	golgi, plastid	64.01	64.62
TraesCS1B01G251000.1	Wheat	plastid	63.82	64.62
Os07t0421300-01	Rice	nucleus, plasma membrane, vacuole	59.92	64.39
TraesCS1A01G238900.1	Wheat	plastid	64.1	64.22
Zm00001d005453_P007	Maize	plastid	65.81	64.11
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	63.82	63.76
CDY60313	Canola	golgi, vacuole	66.19	62.57
HORVU7Hr1G028010.9	Barley	plastid	63.06	62.35
HORVU1Hr1G057330.1	Barley	cytosol, mitochondrion	63.25	61.27
GSMUA_Achr11P...	Banana	plastid	66.0	61.18
OQU88897	Sorghum	mitochondrion	42.92	59.87
CDY71267	Canola	plastid	15.19	55.94
KRH11838	Soybean	vacuole	17.57	28.77
KRH11840	Soybean	cytosol, nucleus	12.54	27.97
KRH36850	Soybean	nucleus	21.56	25.31
KRH53951	Soybean	cytosol, nucleus, vacuole	19.09	24.36
KRH63987	Soybean	endoplasmic reticulum	20.99	24.18
KRH75375	Soybean	endoplasmic reticulum	20.42	23.17
KRH35960	Soybean	endoplasmic reticulum	20.32	23.14
KRH11839	Soybean	extracellular	20.42	22.95
KRH45278	Soybean	endoplasmic reticulum	20.13	22.89
KRH66765	Soybean	plastid	10.83	12.98

Protein Annotations

EntrezGene:100809690	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	EMBL:ACUP02002334
InterPro:DUF5110	EnsemblPlantsGene:GLYMA_04G123900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
UniProt:I1JVV8	InterPro:IPR013780	EnsemblPlants:KRH62685	ProteinID:KRH62685	ProteinID:KRH62685.1	PFAM:PF01055
PFAM:PF13802	PFAM:PF17137	ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF120	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF74650	UniParc:UPI000295F585	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:16016167..16026723

Molecular Weight (calculated)

117448.0 Da

IEP (calculated)

6.065

GRAVY (calculated)

-0.213

Length

1053 amino acids

Sequence
(BLAST)

0001: MIEDALVLPS SSSHSYSVIK VGSVQSPSVL VSPLNHHHRV LLNVPFSSPI IALRRKGVGE KLVPKMANYE GQAVTSRDSE VRSGSMIFEP ILEDGVFRFD
0101: CSANDRDAAY PSISFVNSKD RDTPITTQKV PLYTPTFECL LEQQIVKLEL PVGTSLYGTG EASGELERTG KRVFTWNTDA WGYGPGTTSL YQSHPWVLAV
0201: LPNGEALGIL ADTTRRCEID LRKESTIQFV APSSYPVITF GPFASPTAVL ISLSKAIGTV FMPPKWSLGY HQCRWSYLSD QRVLEVAKTF RKKSIPCDVV
0301: WMDIDYMDGF RCFTFDKERF RDPMSLVKDL HYSGFKAIWM LDPGIKQEEG YFVYDSGSKN DVWVQKADGT PYVGEVWPGP CVFPDYTQSK VRAWWANLVK
0401: DFIPNGVDGI WNDMNEPAIF KVLTKTMPES NVHRGDTELG GCQNHFFYHN VYGLLMARST YEGMKLANEK KRPFVLTRAG FSGSQRYAAT WTGDNLSTWE
0501: HLHMSISMVL QLGLSGQPLS GPDIGGFAGN ATPRLFGRWM GVGSLFPFCR GHSEAGTTDH EPWSFGEECE EVCRLALKRR YRLIPLIYTL FYFAHTRGTP
0601: VSTPTFFADP KDPSLRKLEN SFLLGPVLVY ASTLRRQGLD KLEITLPKGI WLNFDFNDAH PDLPALYLKG GSIIPVGLPH QHVGEANPSD DLTLFVALDE
0701: HGKAEGVLFE DDGDGYEFTK GSYLLTHYVA ELKSSVVTVS VHKTDGSWER PKRRLHIQLL LGGGAMLDTW GTDGEVLQLI LPSEDEVLKL VSTSEKNYKD
0801: RLENATPIPD VEEVSGPKGT ELSRTPIELK NGEWNLKVVP WIGGRIMSMT HIPSGTQWLH SRIEINGYEE YSGMEYRSAG CSEEYSVIDR EPGLVVLEGD
0901: IGGGLVLKRH IYVPKNVPNA IQIDSSIIAR SVGAGSGGFS RLVCLRVHPT FSVLHPSESF VSFTSMDGSK HEVFPDGMEQ FFEGDLIPNG EWRLVDKCLG
1001: LALVNRFSVS EVFKCLVHWD CGTVNLELWS QSRPVSEQSP LRISHQYEVI GIS

Best Arabidopsis Sequence Match ( AT3G23640.3 )
(BLAST)

0001: MERSFVTQAA VSSSSSLTSK ARASSFFFNG RSLPSLNPIS PFLFLPTSRS FALVVKSTLG RNGDKSLLRM TLSGDSSETV EMTSTDMIFE PILEHGVFRF
0101: DCSVDHRKAA FPSVSFKNSK DREVPIVSHI VPAYIPTCGC LQDQQVVTFE FSPGTSFYGT GEVSGQLERT GKRVFTWNTD AWGYGSGTTS LYQSHPWVLV
0201: VLPTGETLGV LADTTRKCEI DLRKEGIIRI ISPASYPIIT FGPFSSPTAV LESLSHAIGT VFMPPKWALG YHQCRWSYMS DKRVAEIAQT FRDKKIPSDV
0301: IWMDIDYMDG FRCFTFDKER FPDPSALAKD LHSNGFKAIW MLDPGIKQEE GYYVYDSGSK NDVWISRADG KPFTGEVWPG PCVFPDYTNS KARSWWANLV
0401: KEFVSNGVDG IWNDMNEPAV FKVVTKTMPE NNIHHGDDEL GGVQNHSHYH NVYGMLMARS TYEGMELADK NKRPFVLTRA GFIGSQRYAA TWTGDNLSNW
0501: EHLHMSISMV LQLGLSGQPL SGPDIGGFAG NATPRLFGRW MGVGAMFPFC RGHSEAGTDD HEPWSFGEEC EEVCRAALKR RYQLLPHFYT LFYIAHTTGA
0601: PVAAPIFFAD PIDSRLRAVE NGFLLGPLLI YASTLSSQGS HELQHILPRG IWHRFDFADS HPDLPTLYLQ GGSIISLAPP HLHVGEFSLS DDLTLLVSLD
0701: ENGKAKGLLF EDDGDGYGYT KGRFLVTHYI AERDSSTVTV KVSKTEGDWQ RPNRRVHVQL LLGGGAMLDA WGMDGEFIHI KVPSESGISE LISTSNERFK
0801: LHMENTKLIP EKEVVPGQKG MELSKEPVEL SSGDWKLNIV PWVGGRILSM THVPSGIQWL HSRIDINGYE EYSGTEYRSA GCTEEYNVIE RDLEHAGEEE
0901: SLILEGDVGG GLVLRRKISI AKDNQRVFRI ASSIEARSVG AGSGGFSRLV CLRVHPTFTL LHPTESFVSF TSIDGSKHEV WPDSGDQIYE GNNLPHGKWM
1001: LVDKSLNLRM VNRFDVSQVF KCIIHWDCGT VNLELWSKER PVSKESPLKI EHEYEVTSFP

Arabidopsis Description

HGL1Heteroglycan glucosidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.