CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00060.t01	Wine grape	extracellular	46.15	50.97
Bra028332.1-P	Field mustard	cytosol, nucleus, peroxisome	73.43	21.23
AT3G23640.3	Thale cress	plastid	77.62	20.94
CDY18102	Canola	plastid	73.43	19.66
CDY60313	Canola	golgi, vacuole	72.38	18.58
OQU88897	Sorghum	mitochondrion	48.25	18.28
KRH62685	Soybean	nucleus	55.94	15.19
KXG34976	Sorghum	cytosol	45.8	15.04
Solyc08g075530.2.1	Tomato	plastid	52.45	14.03
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	44.06	13.19
TraesCS7A01G134500.1	Wheat	extracellular	44.76	13.03
TraesCS1B01G251000.1	Wheat	plastid	47.2	12.98
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	47.55	12.9
TraesCS1D01G239100.1	Wheat	golgi, plastid	46.85	12.85
TraesCS1A01G238900.1	Wheat	plastid	47.2	12.84
Zm00001d019497_P004	Maize	cytosol, nucleus, plastid	44.41	12.82
Os07t0421300-01	Rice	nucleus, plasma membrane, vacuole	43.01	12.55
GSMUA_Achr11P...	Banana	plastid	49.65	12.5
Zm00001d005453_P007	Maize	plastid	47.2	12.49
HORVU7Hr1G028010.9	Barley	plastid	46.15	12.39
Os07t0420700-01	Rice	plasma membrane	44.41	12.33
HORVU1Hr1G057330.1	Barley	cytosol, mitochondrion	45.45	11.96
CDX81531	Canola	extracellular, vacuole	15.04	4.88
CDY04236	Canola	extracellular, vacuole	14.69	4.84
CDY07378	Canola	extracellular, vacuole	14.69	4.78
CDY44885	Canola	extracellular, vacuole	14.69	4.76
CDY38593	Canola	extracellular, vacuole	14.34	4.72
CDX96008	Canola	extracellular, vacuole	14.34	4.72
CDX78437	Canola	extracellular, vacuole	14.69	4.71
CDX70414	Canola	extracellular, plastid, vacuole	14.34	4.57
CDY60045	Canola	cytosol, nucleus, vacuole	9.79	4.37
CDX81200	Canola	vacuole	9.79	4.37
CDY43760	Canola	vacuole	9.79	4.34
CDX84449	Canola	vacuole	9.79	4.34
VIT_02s0087g00030.t01	Wine grape	cytosol	6.29	3.63
VIT_02s0087g00050.t01	Wine grape	cytosol	0.35	0.37
CDY56225	Canola	plasma membrane, plastid, vacuole	0.7	0.36

Protein Annotations

Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:35.2	GO:A0A078K054	UniProt:A0A078K054	EnsemblPlants:CDY71267
ProteinID:CDY71267	ProteinID:CDY71267.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
EnsemblPlantsGene:GSBRNA2T00013833001	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_N_dom	PFAM:PF01055	PFAM:PF13802
PANTHER:PTHR22762	PANTHER:PTHR22762:SF120	SUPFAM:SSF74650	UniParc:UPI0004EF485B	SEG:seg	:

Description

BnaCnng72110DBnaCnng72110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K054]

Coordinates

chrLK045179:+:854..2601

Molecular Weight (calculated)

31348.3 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.111

Length

286 amino acids

Sequence
(BLAST)

001: MVLSSSSLTS GTLPSSPSFF SNDRSLPSLN PIAPSPSLPA IRSSALAVTS RSKGRRCLIR RMNVSKGDGS ETAPSDMIFV PILEDGVFRF DSSVEHRNAA
101: FPSVSFKNSK DREVPIPSHI VPAFTPTYSL LEEQQVVTFQ FSPGTSFYGT GEVGGQLERT GKRVFTWNTD AWGYGPGTTS LYQSHPWVLV VLPTGETLGV
201: LADTTRKCEI DLRKQGVIRI ISPPSYPIIT FGPFSTPTAV LQSLSHAVGT VFMPPKWALG YHQCRWSYMS DKRVAEVSIC SYSMYF

Best Arabidopsis Sequence Match ( AT3G23640.3 )
(BLAST)

0001: MERSFVTQAA VSSSSSLTSK ARASSFFFNG RSLPSLNPIS PFLFLPTSRS FALVVKSTLG RNGDKSLLRM TLSGDSSETV EMTSTDMIFE PILEHGVFRF
0101: DCSVDHRKAA FPSVSFKNSK DREVPIVSHI VPAYIPTCGC LQDQQVVTFE FSPGTSFYGT GEVSGQLERT GKRVFTWNTD AWGYGSGTTS LYQSHPWVLV
0201: VLPTGETLGV LADTTRKCEI DLRKEGIIRI ISPASYPIIT FGPFSSPTAV LESLSHAIGT VFMPPKWALG YHQCRWSYMS DKRVAEIAQT FRDKKIPSDV
0301: IWMDIDYMDG FRCFTFDKER FPDPSALAKD LHSNGFKAIW MLDPGIKQEE GYYVYDSGSK NDVWISRADG KPFTGEVWPG PCVFPDYTNS KARSWWANLV
0401: KEFVSNGVDG IWNDMNEPAV FKVVTKTMPE NNIHHGDDEL GGVQNHSHYH NVYGMLMARS TYEGMELADK NKRPFVLTRA GFIGSQRYAA TWTGDNLSNW
0501: EHLHMSISMV LQLGLSGQPL SGPDIGGFAG NATPRLFGRW MGVGAMFPFC RGHSEAGTDD HEPWSFGEEC EEVCRAALKR RYQLLPHFYT LFYIAHTTGA
0601: PVAAPIFFAD PIDSRLRAVE NGFLLGPLLI YASTLSSQGS HELQHILPRG IWHRFDFADS HPDLPTLYLQ GGSIISLAPP HLHVGEFSLS DDLTLLVSLD
0701: ENGKAKGLLF EDDGDGYGYT KGRFLVTHYI AERDSSTVTV KVSKTEGDWQ RPNRRVHVQL LLGGGAMLDA WGMDGEFIHI KVPSESGISE LISTSNERFK
0801: LHMENTKLIP EKEVVPGQKG MELSKEPVEL SSGDWKLNIV PWVGGRILSM THVPSGIQWL HSRIDINGYE EYSGTEYRSA GCTEEYNVIE RDLEHAGEEE
0901: SLILEGDVGG GLVLRRKISI AKDNQRVFRI ASSIEARSVG AGSGGFSRLV CLRVHPTFTL LHPTESFVSF TSIDGSKHEV WPDSGDQIYE GNNLPHGKWM
1001: LVDKSLNLRM VNRFDVSQVF KCIIHWDCGT VNLELWSKER PVSKESPLKI EHEYEVTSFP

Arabidopsis Description

HGL1Heteroglycan glucosidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.