Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G49760.1 | Thale cress | plasma membrane | 57.2 | 29.59 |
| AT5G49770.1 | Thale cress | plasma membrane | 52.74 | 27.48 |
| AT5G49780.2 | Thale cress | plasma membrane | 52.33 | 26.38 |
| KRH30865 | Soybean | plasma membrane | 37.12 | 19.66 |
| KRH32710 | Soybean | plasma membrane | 36.71 | 19.42 |
| AT1G79620.5 | Thale cress | plasma membrane | 38.54 | 19.06 |
| AT1G06840.1 | Thale cress | plasma membrane, vacuole | 27.99 | 14.48 |
| AT5G01950.7 | Thale cress | plasma membrane | 27.99 | 14.44 |
| AT3G53590.1 | Thale cress | mitochondrion, plasma membrane | 25.96 | 13.56 |
| AT5G37450.2 | Thale cress | plasma membrane | 25.96 | 13.02 |
| KRH01898 | Soybean | plasma membrane | 5.88 | 5.21 |
| AT2G11520.1 | Thale cress | plasma membrane | 5.07 | 4.9 |
| AT4G00330.2 | Thale cress | plastid | 2.43 | 2.92 |
| AT5G58940.1 | Thale cress | cytosol, nucleus, plastid | 2.03 | 2.13 |
| KRH26180 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:18.4.1.8.1 | Gene3D:3.80.10.10 | EntrezGene:835038 | ProteinID:AED95853.1 | ArrayExpress:AT5G49750 | EnsemblPlantsGene:AT5G49750 |
| RefSeq:AT5G49750 | TAIR:AT5G49750 | RefSeq:AT5G49750-TAIR-G | EnsemblPlants:AT5G49750.1 | TAIR:AT5G49750.1 | Unigene:At.55460 |
| UniProt:F4K682 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_199786.2 | PFAM:PF08263 | PFscan:PS51450 |
| PANTHER:PTHR27003 | PANTHER:PTHR27003:SF134 | SUPFAM:SSF52058 | UniParc:UPI000034F2E5 | SEG:seg | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4K682]
Coordinates
chr5:+:20210878..20213734
Molecular Weight (calculated)
54778.4 Da
IEP (calculated)
8.302
GRAVY (calculated)
0.067
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MICSNSTLCK LSCLHVLKAR QFSFIYLTCV HHLLFHRSFF DTIKSKGSEK RFFVDLTMSS RIRTCMLLIL FFFQKCYVSA LTNVFDASAL RGMKNEWTRS
101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL
201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT
301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV
401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV
101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL
201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT
301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV
401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.