Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08270 | Canola | cytosol | 100.0 | 100.0 |
| Bra013769.1-P | Field mustard | nucleus | 99.55 | 73.27 |
| Bra030206.1-P | Field mustard | cytosol | 99.55 | 66.07 |
| Bra031403.1-P | Field mustard | cytosol | 28.25 | 18.64 |
| Bra004907.1-P | Field mustard | cytosol | 26.01 | 18.59 |
| Bra040313.1-P | Field mustard | cytosol, golgi, plastid | 29.6 | 18.44 |
| Bra021318.1-P | Field mustard | cytosol | 28.25 | 18.26 |
| Bra019062.1-P | Field mustard | cytosol | 28.7 | 18.08 |
| Bra027457.1-P | Field mustard | cytosol | 30.94 | 17.92 |
| VIT_00s0361g00030.t01 | Wine grape | cytosol | 4.04 | 9.09 |
Protein Annotations
| EnsemblPlants:Bra013768.1 | EnsemblPlants:Bra013768.1-P | EnsemblPlantsGene:Bra013768 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003854 | GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0016616 | GO:GO:0055114 | InterPro:3Beta_OHSteriod_DH/Estase | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF503 |
| PFAM:PF01073 | SUPFAM:SSF51735 | UniParc:UPI00025460B4 | UniProt:M4DBA8 | MapMan:35.1 | : |
Description
AT1G25460 (E=2e-059) | oxidoreductase family protein
Coordinates
chrA01:+:7686715..7688051
Molecular Weight (calculated)
25080.7 Da
IEP (calculated)
8.720
GRAVY (calculated)
-0.526
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRTRSNY SSPLRRDMTE EKDEKIVPNL PKSVEFLSMM TSIASHVVKA LLDLGHSVRT TVRDSSDEEK VRFLWELKGA KERLKIFEAD LTVEGSFDEA
101: IKGVDGVFHI ASRVTLCVDS NDLEKLVDRD INGTRNLMNS CEKSRNTVKR IVLTSSSTAV RYRYDATEAS PLNESHYSDL DYSKSFKALS GQVCTHLCFN
201: TSSNCSNLKR KASAFKRLPE PTG
101: IKGVDGVFHI ASRVTLCVDS NDLEKLVDRD INGTRNLMNS CEKSRNTVKR IVLTSSSTAV RYRYDATEAS PLNESHYSDL DYSKSFKALS GQVCTHLCFN
201: TSSNCSNLKR KASAFKRLPE PTG
001: MAEYLVTGGT SFIASHVIKS LLEFGHYVRT TVRDSDEEKV GFLWDLKGAK ERLKIFEADL TIEGSFDEAV NGVDGVFHIA SRVSVRLDNN NLDKFDPNIS
101: GTMNVMNSCA KSRNTVKRIV LTSSSTAIRY RFDATQVSPL NESHWTDLEY CKHFKIWYAY KKTLGEKEAW RIAADKKLNL VVVIPSFCIG PILSPKPTSS
201: PLIFLSIIKG TRGTYPNFRG GFVHIDDVVA AQILAMEEPK ASGRILCSSS VAHWSEIIEM LRIKYPLYPF ETKCGSEEGK DMPHSLDTTK IHELGFASFK
301: SLTEMFDDCI KCFQDKGLL
101: GTMNVMNSCA KSRNTVKRIV LTSSSTAIRY RFDATQVSPL NESHWTDLEY CKHFKIWYAY KKTLGEKEAW RIAADKKLNL VVVIPSFCIG PILSPKPTSS
201: PLIFLSIIKG TRGTYPNFRG GFVHIDDVVA AQILAMEEPK ASGRILCSSS VAHWSEIIEM LRIKYPLYPF ETKCGSEEGK DMPHSLDTTK IHELGFASFK
301: SLTEMFDDCI KCFQDKGLL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G25460]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.