Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034424.1-P | Field mustard | plastid | 96.15 | 95.54 |
| CDY28412 | Canola | plastid | 96.15 | 95.54 |
| AT1G35210.1 | Thale cress | plastid | 64.74 | 64.74 |
Protein Annotations
| EnsemblPlants:CDX73319 | EnsemblPlantsGene:GSBRNA2T00106424001 | PANTHER:PTHR34046 | PANTHER:PTHR34046:SF3 | ProteinID:CDX73319 | ProteinID:CDX73319.1 |
| SEG:seg | UniParc:UPI0004EE2CDB | MapMan:35.2 | : | : | : |
Description
BnaC05g27870D
Coordinates
chrLK031798:-:1507320..1507790
Molecular Weight (calculated)
17475.2 Da
IEP (calculated)
10.926
GRAVY (calculated)
-0.611
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLSTSLLG IRRMSKPQEK TKNTMLCKKH PKHRQSPGVC SLCLNERLSM FIKATSSSTN SYLRLRKARH IIYSSSTTSL SSSSSVSSCP SPLVDRRCYL
101: LMAGGSGREK GSLCMTKSRS VAYKVDDEKR KKETRGGFFF RFGGFKKREQ ESIVDN
101: LMAGGSGREK GSLCMTKSRS VAYKVDDEKR KKETRGGFFF RFGGFKKREQ ESIVDN
001: MASLSTSLLG IRRGSSNKNK AEDKTKNAVF CKKHPKHRQS PGVCSLCLNE RLSLFIKAAS SRRPRSRQIL STSSSTTSSL SSDGSSSVSS CPSPIVDRRR
101: YLLMSGGSGR GEKVISWMTK SRSVAYKVDD EKRRKKKTKT NSGFFFGLVM GTKKRQ
101: YLLMSGGSGR GEKVISWMTK SRSVAYKVDD EKRRKKKTKT NSGFFFGLVM GTKKRQ
Arabidopsis Description
Uncharacterized protein T32G9.25 [Source:UniProtKB/TrEMBL;Acc:Q9C6F2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.