CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G347500.1	Wheat	plastid	58.96	57.36
KXG27212	Sorghum	cytosol	40.24	43.72

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	EntrezGene:8077973	UniProt:C5X0X0	ncoils:Coil	EnsemblPlants:EER92965
ProteinID:EER92965	ProteinID:EER92965.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	PFAM:PF05739
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF207	SMART:SM00397	EnsemblPlantsGene:SORBI_3001G528000	SUPFAM:SSF58038
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001A82659	RefSeq:XP_002465967.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:79192649..79194737

Molecular Weight (calculated)

28186.4 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.324

Length

251 amino acids

Sequence
(BLAST)

001: MARPVLPITA PRGGAAPPSS WSSPVDQWTK RLQEAQRLVD EVAERVAERE SVPPSLPREL QRRTAEIRRK VAIVGTRLDM LKEDLSDLPK RQNISLKQLG
101: KLAEKLAGVC SKAQEVGGQF TMKYSSDRND LCGWSAKIDV NSIANMDNHE MVKLQRKVMK EQDAELKILE ETVTSTKHIA LAINGELDLH TKLIEKLDED
201: VEETSNQLQR ALKRLKALNT RMRKSRSCWG IVLSVVAVVI CVAVFWALIT I

Best Arabidopsis Sequence Match ( AT1G79590.3 )
(BLAST)

001: MGIADFGSQW LILFDSSFCF RRLIFFSTQQ SMASSSDPWM REYNEALKLS EDINGMMSER NASGLTGPDA QRRASAIRRK ITILGTRLDS LQSLLVKVPG
101: KQHVSEKEMN RRKDMVGNLR SKTNQVASAL NMSNFANRDS LFGTDLKPDD AINRVSGMDN QGIVVFQRQV MREQDEGLEK LEETVMSTKH IALAVNEELT
201: LQTRLIDDLD YDVDITDSRL RRVQKSLALM NKSMKSGCSC MSMLLSVLGI VGLALVIWLL VKYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.