Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G030420.6 | Barley | cytosol, peroxisome | 98.11 | 24.64 |
| HORVU7Hr1G117420.1 | Barley | vacuole | 18.87 | 1.17 |
| HORVU1Hr1G065070.6 | Barley | cytosol | 16.98 | 0.99 |
| HORVU7Hr1G045710.4 | Barley | cytosol | 3.77 | 0.67 |
| HORVU6Hr1G071120.1 | Barley | plastid | 3.77 | 0.63 |
| HORVU1Hr1G008230.4 | Barley | plastid | 9.43 | 0.57 |
| HORVU2Hr1G100930.1 | Barley | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G030440.1 | EnsemblPlantsGene:HORVU3Hr1G030440 | UniParc:UPI0002959849 | UniProt:M0YHV2 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr3H:+:146614887..146615048
Molecular Weight (calculated)
5958.0 Da
IEP (calculated)
4.327
GRAVY (calculated)
-0.674
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: MSVPEAGQSA GRDEQEMDDY EQHQTRVLMA LMQGLCAARY RKADNTPCLV DQV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.