CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69741	Soybean	cytosol	96.13	96.13
KRH28835	Soybean	nucleus	92.9	92.9
KRH76622	Soybean	cytosol, endoplasmic reticulum, nucleus	92.9	92.9
KRH17482	Soybean	cytosol	57.42	80.91
KRH13748	Soybean	cytosol	45.16	38.25

Protein Annotations

EntrezGene:100306458	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EMBL:ACUP02010134	EMBL:BT090573	UniProt:C6SZH2
EnsemblPlantsGene:GLYMA_16G123700	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	EnsemblPlants:KRH08010	ProteinID:KRH08010	ProteinID:KRH08010.1	PFAM:PF01466	PFAM:PF03931
PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF88	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf
InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer
UniParc:UPI000189D80A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:27303655..27305459

Molecular Weight (calculated)

17483.6 Da

IEP (calculated)

4.254

GRAVY (calculated)

-0.411

Length

155 amino acids

Sequence
(BLAST)

001: MASTKKITLK SSDGEAFEVE EAVALESQTI KHMIEDDCAD SGIPLPNVTS KILAKVIEYC KKHVEANSAD EKPSEDVLKA WDVDFVNVDQ ATLFDLILAA
101: NYLNIKSLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.