CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28835	Soybean	nucleus	98.71	98.71
KRH08010	Soybean	cytosol	92.9	92.9
KRH69741	Soybean	cytosol	92.9	92.9
KRH17482	Soybean	cytosol	54.84	77.27
KRH13748	Soybean	cytosol	44.52	37.7

Protein Annotations

EntrezGene:100809769	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	UniProt:A0A0R0LC97	EMBL:ACUP02000630	EnsemblPlantsGene:GLYMA_01G163900
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
EnsemblPlants:KRH76622	ProteinID:KRH76622	ProteinID:KRH76622.1	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729
PANTHER:PTHR11165	PANTHER:PTHR11165:SF88	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf
SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000189D80C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:50149376..50151828

Molecular Weight (calculated)

17467.5 Da

IEP (calculated)

4.265

GRAVY (calculated)

-0.485

Length

155 amino acids

Sequence
(BLAST)

001: MSSAKKITLK SSDGEAFEVD EAVALESQTI KHMIEDDCAD SGIPLPNVTS KILAKVIEYC KKHVEAANPE DKPSEDDLKA WDADFVKVDQ ATLFDLILAA
101: NYLNIKSLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.