CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063480.2.1	Tomato	cytosol, nucleus, plasma membrane	32.74	91.12
KRH27185	Soybean	plasma membrane	67.26	82.58
VIT_19s0014g03400.t01	Wine grape	plasma membrane	78.25	79.09
PGSC0003DMT400090495	Potato	plasma membrane	75.41	76.41
PGSC0003DMT400049559	Potato	plasma membrane	75.41	76.41
CDY43041	Canola	cytosol	53.9	75.75
Bra029027.1-P	Field mustard	cytosol	56.26	75.44
PGSC0003DMT400064427	Potato	plasma membrane	73.88	74.94
Solyc10g006870.1.1	Tomato	plasma membrane	74.23	74.76
CDY63832	Canola	plasma membrane	74.59	73.97
AT5G54380.1	Thale cress	plasma membrane	74.59	73.8
Bra002993.1-P	Field mustard	plasma membrane	74.7	73.75
CDY67402	Canola	plasma membrane	62.88	72.78
CDY43828	Canola	plasma membrane	68.56	72.32
GSMUA_Achr9P02870_001	Banana	plasma membrane	54.26	71.61
KRH24985	Soybean	plasma membrane	52.84	53.41
KRH10340	Soybean	plasma membrane	46.45	53.04
KRG99398	Soybean	mitochondrion, plasma membrane	25.65	52.29
KRG88684	Soybean	plasma membrane	50.12	52.28
KRH27450	Soybean	plasma membrane	51.54	49.66
KRH20802	Soybean	plasma membrane	50.95	49.6
KRH08877	Soybean	plasma membrane	43.62	47.74
KRH03519	Soybean	plasma membrane	47.75	46.92
KRH38391	Soybean	plasma membrane	44.8	46.33
KRH35245	Soybean	plasma membrane	44.8	45.88
KRG91576	Soybean	plastid	44.8	45.12
KRH00476	Soybean	plasma membrane	46.22	43.74
KRH36805	Soybean	plasma membrane	43.97	43.66
KRH40710	Soybean	endoplasmic reticulum	45.86	43.3
KRH04510	Soybean	mitochondrion, plasma membrane	42.08	42.23
KRG92692	Soybean	plasma membrane	41.73	41.87
KRH68745	Soybean	plasma membrane	42.55	41.43
KRG96984	Soybean	plasma membrane	42.08	41.11
KRH34099	Soybean	plasma membrane	41.84	41.07
KRH70980	Soybean	plasma membrane	30.38	39.72
KRH58006	Soybean	plasma membrane	39.13	39.5
KRH58005	Soybean	plasma membrane	35.7	38.08
KRG88508	Soybean	plasma membrane	36.52	37.73
KRH18358	Soybean	plasma membrane	36.41	37.61
KRH45075	Soybean	plasma membrane	36.64	36.82
KRH72177	Soybean	plasma membrane	35.93	36.8
KRH18363	Soybean	plasma membrane	34.04	36.59
KRG88507	Soybean	plasma membrane	34.04	36.59
KRH18364	Soybean	plasma membrane	36.29	36.37
KRH01333	Soybean	plasma membrane	37.23	36.25
KRH18365	Soybean	plasma membrane	38.18	36.05
KRH01348	Soybean	plasma membrane	37.59	36.01
KRH01335	Soybean	plasma membrane	36.88	35.94
KRH45078	Soybean	plasma membrane	37.0	35.94
KRH01344	Soybean	plasma membrane	36.29	35.82
KRH18357	Soybean	plasma membrane	37.71	35.68
KRH45080	Soybean	plasma membrane	32.74	35.06
KRH01346	Soybean	mitochondrion, plasma membrane	36.17	34.97
KRH18359	Soybean	plasma membrane	28.84	34.76
KRH70978	Soybean	mitochondrion, plasma membrane, vacuole	33.69	34.76
KRH01349	Soybean	plasma membrane	34.75	34.63
KRH01345	Soybean	cytosol	33.81	31.46
KRH01343	Soybean	plasma membrane	37.35	28.14
KRG93678	Soybean	plasma membrane	36.52	26.05

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100809700	MapMan:11.10.2.4.2	MapMan:18.4.1.16	Gene3D:2.60.120.430	Gene3D:3.30.200.20
EMBL:ACUP02007443	EnsemblPlantsGene:GLYMA_12G148200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	UniProt:I1LT08	InterPro:IPR000719	EnsemblPlants:KRH26047
ProteinID:KRH26047	ProteinID:KRH26047.1	InterPro:Kinase-like_dom_sf	InterPro:Malectin-like_Carb-bd_dom	PFAM:PF07714	PFAM:PF12819
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27003	PANTHER:PTHR27003:SF41	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix
UniParc:UPI00023D0DB7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:20759752..20763257

Molecular Weight (calculated)

93197.0 Da

IEP (calculated)

5.941

GRAVY (calculated)

-0.037

Length

846 amino acids

Sequence
(BLAST)

001: MLKMELIKWV PYVVVVAFLV FVNGSFALYT PPDRYLIACG SSQNVTFQGR TFVPDSQHSS LVMKTGNSVI ASSNSSSAPL PIYQSARVFT EKASYRFKIQ
101: QEGRHWVRLY FSPIPNSAHN LTSASLTVVT DDFVLLSNFT FRKFNGSYMF KEYAINVTSD TLVVTFIPSN GSVAFVNAIE VVSMPNELFF DHALAVNPPA
201: TFSGLSELAF ETVYRLNMGG PLITAQNDTL GRTWVNDRKY LHVNSSVLNV SVNPSSIKYP VAVTPETAPN WVYATAEAMG DANVNDPNFN ITWVFNVDPN
301: FSYFIRAHFC DIMSKSLNTL VFNVFVNSDI ALQSFDISSI TNDLAVPYYK DFVANSSADS STLTVSVGPD TVADFPNATM NGLEIMKISN TLKSLDGLYS
401: VDSLLPSSHS KKNMVGVIVG LAVVALAAVA MVGLCYCCLM RRKSESSTQQ GHSWLPLPLY GNSLTMTKNS TISQKSGTAS CISLASSNLG RFFSFQEILD
501: ASNKFDEKLL LGVGGFGRVY KGTLEDGTNV AVKRGNPRSE QGLAEFRTEI EMLSKLRHCH LVSLIGYCDE RSEMILVYEY MANGPLRSHL YGTDLPPLSW
601: KQRLEICIGA ARGLHYLHTG AAQSIIHRDV KTTNILLDEN FVAKVADFGL SKTGPSLDQT HVSTAVKGSF GYLDPEYFRR QQLTEKSDVY SFGVVLMEVL
701: CTRPALNPVL PREQVNIAEW AMTWQKKGML DQIMDQNLVG KVNPASLKKF GETAEKCLAE HGVDRPSMGD VLWNLEYALQ LQETSSALME PEDNSTNHIT
801: GIQLTPLDHF DNSVSMIDGG NSCTDDDTED VATSAVFSQL VNPRGR

Best Arabidopsis Sequence Match ( AT5G54380.1 )
(BLAST)

001: MVFTKSLLVL LWFLSCYTTT TSSALFNPPD NYLISCGSSQ NITFQNRIFV PDSLHSSLVL KIGNSSVATS TTSNNSTNSI YQTARVFSSL ASYRFKITSL
101: GRHWIRLHFS PINNSTWNLT SASITVVTED FVLLNNFSFN NFNGSYIFKE YTVNVTSEFL TLSFIPSNNS VVFVNAIEVV SVPDNLIPDQ ALALNPSTPF
201: SGLSLLAFET VYRLNMGGPL LTSQNDTLGR QWDNDAEYLH VNSSVLVVTA NPSSIKYSPS VTQETAPNMV YATADTMGDA NVASPSFNVT WVLPVDPDFR
301: YFVRVHFCDI VSQALNTLVF NLYVNDDLAL GSLDLSTLTN GLKVPYFKDF ISNGSVESSG VLTVSVGPDS QADITNATMN GLEVLKISNE AKSLSGVSSV
401: KSLLPGGSGS KSKKKAVIIG SLVGAVTLIL LIAVCCYCCL VASRKQRSTS PQEGGNGHPW LPLPLYGLSQ TLTKSTASHK SATASCISLA STHLGRCFMF
501: QEIMDATNKF DESSLLGVGG FGRVYKGTLE DGTKVAVKRG NPRSEQGMAE FRTEIEMLSK LRHRHLVSLI GYCDERSEMI LVYEYMANGP LRSHLYGADL
601: PPLSWKQRLE ICIGAARGLH YLHTGASQSI IHRDVKTTNI LLDENLVAKV ADFGLSKTGP SLDQTHVSTA VKGSFGYLDP EYFRRQQLTE KSDVYSFGVV
701: LMEVLCCRPA LNPVLPREQV NIAEWAMAWQ KKGLLDQIMD SNLTGKVNPA SLKKFGETAE KCLAEYGVDR PSMGDVLWNL EYALQLEETS SALMEPDDNS
801: TNHIPGIPMA PMEPFDNSMS IIDRGGVNSG TGTDDDAEDA TTSAVFSQLV HPRGR

Arabidopsis Description

THE1Receptor-like protein kinase THESEUS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.