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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
YLoc:cytosol
mitochondrion: 15069638
extracellular: 18372294
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0385400-01 Rice cytosol, endoplasmic reticulum, plasma membrane 47.89 21.76
Os05t0219900-01 Rice cytosol, peroxisome, plasma membrane, plastid 42.61 19.45
Os07t0181100-01 Rice cytosol, peroxisome, plasma membrane 37.68 17.15
Os01t0226600-02 Rice endoplasmic reticulum, peroxisome, plasma membrane 38.38 16.62
Os01t0623200-01 Rice cytosol, peroxisome, plasma membrane 30.63 13.22
Os01t0247700-01 Rice extracellular, plasma membrane 11.27 9.22
Os05t0269200-00 Rice cytosol, golgi, plasma membrane 11.27 8.02
Protein Annotations
MapMan:25.5.2.3Gene3D:3.30.70.100EntrezGene:9272622UniProt:A0A0P0VJT1ProteinID:BAS79026.1GO:GO:0003674
GO:GO:0005215GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0006810GO:GO:0006873
GO:GO:0008150GO:GO:0008308GO:GO:0009987GO:GO:0015698GO:GO:0016020GO:GO:0016021
GO:GO:0019725GO:GO:0030001GO:GO:0046872InterPro:HMA_domInterPro:HMA_dom_sfInterPro:IPR006121
EnsemblPlantsGene:Os02g0530100EnsemblPlants:Os02t0530100-01PFAM:PF00403PFscan:PS50846PANTHER:PTHR31269PANTHER:PTHR31269:SF2
InterPro:SLAC/SLAHSUPFAM:SSF55008UniParc:UPI000393A682SEG:seg::
Description
COPPER CHAPERONE HOMOLOGSimilar to C4-dicarboxylate transporter/malic acid transport protein. (Os02t0530100-01);Copper chaperone homolog CCH. (Os02t0530100-02)
Coordinates
chr2:-:19472233..19486248
Molecular Weight (calculated)
30045.6 Da
IEP (calculated)
7.414
GRAVY (calculated)
-0.274
Length
284 amino acids
Sequence
(BLAST)
001: RQVRAAGQAA FRSQPIPGGK PARRATSNRG GRMMSRDRRY DSFKTWSGKL ERQLAHLAGA GPEFPEEEED GCDAISSHHT KSMPQVDRFF AALECPELDK
101: LRSSEELVLP LDKTWPFLLR FPVSAFGICL GVSTQAILWK TVATSAPTRF LHVTTKTVVL KVGMSCQGCA GAVRRVLTKM EGVETFDIDM EQQKVTVKGN
201: VKPEDVFQTV SKTGKKTSFW EAAEAASDSA AAAAPAPAPA TAEAEAEAEA APPTTTAAEA PAIAAAAAPP APAAPEAAPA KADA
Best Arabidopsis Sequence Match ( AT5G24030.2 )
(BLAST)
001: MEEKPNYVIQ VEEELPTLLR KATTEEMVGF DNYKENGHPF PHSISRFHPS HASTTTLNGQ ETSRSIDTME AHHHNYNETT PWTHQRKPSI SMPTSPNVLM
101: ISDPTTSLSS ENHKNSGSTG KSVKFLSQPM TKVSSLYIES GNGDDDRRQS HDNHHHHLHR QHQSGHHQNQ NQAANKLKDN RYNSFKTWSG KLERQFTRKP
201: ASVEPEAPNR NNQNLNTNEA MPVDRYYDAL EGPELETLRP QEEIVLPNDK KWPFLLRYPI STFGMCLGVS SQAIMWKTLA TAEPTKFLHV PLWINQGLWF
301: ISVALILTIA TIYLLKIILF FEAVRREYYH PIRINFFFAP FISLLFLALG VPPSIITDLP HFLWYLLMFP FICLELKIYG QWMSGGQRRL SRVANPTNHL
401: SVVGNFVGAL LGASMGLREG PIFFYAVGMA HYLVLFVTLY QRLPTNETLP KDLHPVFFLF VAAPSVASMA WAKVTGSFDY GSKVCYFIAI FLYFSLAVRI
501: NFFRGIK
Arabidopsis Description
SLAH3S-type anion channel SLAH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLV9]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.