Factsheet for Os02t0600100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0600033-00	Rice	cytoskeleton, cytosol, nucleus	8.25	6.84
Os02t0598500-00	Rice	cytosol	5.93	4.41
Os02t0599150-01	Rice	cytosol	5.93	4.41
Os02t0599151-00	Rice	vacuole	6.44	3.4
Os02t0599200-01	Rice	cytosol, peroxisome	3.87	3.25
Os06t0597200-01	Rice	cytosol	0.77	0.82
Os02t0607500-00	Rice	vacuole	1.03	0.69
Os02t0799000-01	Rice	cytosol, plastid	0.26	0.28
Os06t0179700-01	Rice	cytosol, plastid	0.26	0.28
Os06t0651600-01	Rice	cytosol	0.26	0.27
Os01t0295700-01	Rice	cytosol	0.26	0.26
Os05t0134200-01	Rice	cytosol	0.26	0.26
Os02t0606900-01	Rice	cytosol	0.0	0.0
Os09t0558000-01	Rice	plasma membrane	0.0	0.0
Os09t0314400-01	Rice	mitochondrion	0.0	0.0
Os04t0500900-00	Rice	plasma membrane	0.0	0.0
Os02t0599700-01	Rice	nucleus, peroxisome, plastid	0.0	0.0
Os02t0180000-01	Rice	cytosol, plasma membrane	0.0	0.0
Os01t0541900-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	EntrezGene:4329887	ProteinID:BAD22146.1	ProteinID:BAF09257.1	ProteinID:BAS79598.1
ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0030234	GO:GO:0043161	GO:GO:0043169	GO:GO:0046872	GO:GO:0050790	InterPro:IPR000717
EnsemblPlantsGene:Os02g0600100	EnsemblPlants:Os02t0600100-01	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	UniProt:Q6K5H9	InterPro:Rpn7/CSN1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0000377DC5	InterPro:WH_DNA-bd_sf	RefSeq:XP_015622707.1	:

Description

Similar to 26S proteasome subunit RPN7. (Os02t0600100-01)

Coordinates

chr2:+:23461505..23465753

Molecular Weight (calculated)

44152.2 Da

IEP (calculated)

5.527

GRAVY (calculated)

-0.118

Length

388 amino acids

Sequence
(BLAST)

001: MDAGGEEAKQ ERHLVLAHKL FLLSHPDLDD LAKVALRSDA LDAVKSDGMA PLFESLAAAG VLEPDDALLA EMRARIDEEV RKLDEKIADA EENLGESEVR
101: EAHLAKSLYF MRVGEKEKAL EQLKVTEGKT VAVGQKMDLV FYTLQIGLFH MDFDLISKSI DKAKNLFEEG GDWERKNRLK VYEGLYFMAT RNFKKAASLF
201: LDSISTFTTY ELFPYDTFVF YTVITSIITL DRVSLKQKVV DAPEILAVIG KVPHLSEFLN SLYNCQYKSF FVAFSGMTEQ IKLDRYLQPH FRYYMREVRT
301: VVYSQFLESY KSVTMEAMAA AFGVTVDFID QELSRFIAAG KLHCKIDKVA GVLETNRPDA RNAFYQATIK QGDFLLNRIQ KLSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.