Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 3
- endoplasmic reticulum 3
- golgi 3
- vacuole 3
- peroxisome 1
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0272800-01 | Rice | extracellular, plastid | 7.23 | 53.28 |
| Os11t0266500-01 | Rice | cytosol | 6.9 | 36.9 |
| Os10t0131000-00 | Rice | cytosol | 7.45 | 31.02 |
| TraesCS5A01G305700.1 | Wheat | peroxisome | 10.34 | 29.62 |
| TraesCSU01G018700.1 | Wheat | cytosol | 9.34 | 28.77 |
| TraesCS3B01G066500.1 | Wheat | peroxisome, plastid | 8.12 | 26.64 |
| Os04t0193950-00 | Rice | cytosol | 5.67 | 22.77 |
Protein Annotations
| Gene3D:3.40.50.300 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:4351953 | ProteinID:ABA97376.1 | EMBL:AK070311 |
| ProteinID:BAF29567.1 | ProteinID:BAT16645.1 | ProteinID:BAT16646.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0043531 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:NB-ARC | EnsemblPlantsGene:Os12g0270300 | EnsemblPlants:Os12t0270300-01 | InterPro:P-loop_NTPase |
| PFAM:PF00931 | PRINTS:PR00364 | PANTHER:PTHR43889 | PANTHER:PTHR43889:SF46 | UniProt:Q2QU88 | InterPro:RX-like_CC |
| SUPFAM:SSF52058 | SUPFAM:SSF52540 | UniParc:UPI000068159E | RefSeq:XP_015619826.1 | RefSeq:XP_015619827.1 | SEG:seg |
Description
NB-ARC domain containing protein. (Os12t0270300-01);Hypothetical conserved gene. (Os12t0270300-02)
Coordinates
chr12:-:9782561..9786758
Molecular Weight (calculated)
102752.0 Da
IEP (calculated)
7.780
GRAVY (calculated)
-0.155
Length
899 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAFVSASV GVLNPLLTKL SALVEGEYKL LKSVKKDIIF LRNELSSISV LLEHLSTKED KLDGPTKEWR NNMLELAYDI EDCIDLFIHK LSCGDANANF
101: VQKIGSKIKK LWGKHQITEC IQELKNRVME EDQRRKRNQI DDFISEPSVV EIDPRLPALY EEVERLVGID GPREKIIKWI MTKGKPLEQR KVVSIVGLGG
201: LGKTTLANEV YKTIQGDFKC ITFVSISRTP NIRKILVDML KGLGSNGDVS EDEQNLISHL RGFLKDKRYL IVFDDIWDIG AWKVVNCAFP ENNLGSIIIT
301: TTRNTAVAEA CSRTTSEGYL HSMQPLEEQD SQRLFYRRAF NSESCCPPHL EDISHAIISK CRSLPLAIIS IASLLSIKPD TEDQWMQVHN SIGVTLNSDV
401: EVRKILMLSY YDLPYPLKNC LLYLSMYPED YVIDRQELIW RWIAEGFIIE AKGKTREQVG ENYFNELINR SLIQPVYIQY DGRASCCRVH DIVLDLIISL
501: STGQNFVTIV HEQQHWSSFK KIRRTWFPSN GTDNRIVKEI TNNCSHVRSL FFDSPKPEQI PQFKKCHALR VLVLDGCMSL ESQHINSLTY LFQLKYLKLN
601: VANVTEMPKD IGRLQQLETL IIRGGGHVNE INIPSSVCRL QKLERLIVDY PMRLPDEIGF LQALEMLSLF YNIEYSIKCL QELRRLTRLR YLRIRTPFGG
701: DVARFERYKD AFYMTLDELG KNSLQSLHVH VTTKFSDTLM DSCCSSAPGL RELSTSGVGI SKLSEQMISL SNLAYLVIFY NTRSNDQKDI NLLGCIPKLL
801: YLKVIFAQGW EDGLTVGCGG FPCLKELMFR HSRLHWLLFE PGAMPKLQRL SIELFAQKAA SKLGFEQSFV HLSSLQHLIV VLDCSDAHYK GRESFGRCH
101: VQKIGSKIKK LWGKHQITEC IQELKNRVME EDQRRKRNQI DDFISEPSVV EIDPRLPALY EEVERLVGID GPREKIIKWI MTKGKPLEQR KVVSIVGLGG
201: LGKTTLANEV YKTIQGDFKC ITFVSISRTP NIRKILVDML KGLGSNGDVS EDEQNLISHL RGFLKDKRYL IVFDDIWDIG AWKVVNCAFP ENNLGSIIIT
301: TTRNTAVAEA CSRTTSEGYL HSMQPLEEQD SQRLFYRRAF NSESCCPPHL EDISHAIISK CRSLPLAIIS IASLLSIKPD TEDQWMQVHN SIGVTLNSDV
401: EVRKILMLSY YDLPYPLKNC LLYLSMYPED YVIDRQELIW RWIAEGFIIE AKGKTREQVG ENYFNELINR SLIQPVYIQY DGRASCCRVH DIVLDLIISL
501: STGQNFVTIV HEQQHWSSFK KIRRTWFPSN GTDNRIVKEI TNNCSHVRSL FFDSPKPEQI PQFKKCHALR VLVLDGCMSL ESQHINSLTY LFQLKYLKLN
601: VANVTEMPKD IGRLQQLETL IIRGGGHVNE INIPSSVCRL QKLERLIVDY PMRLPDEIGF LQALEMLSLF YNIEYSIKCL QELRRLTRLR YLRIRTPFGG
701: DVARFERYKD AFYMTLDELG KNSLQSLHVH VTTKFSDTLM DSCCSSAPGL RELSTSGVGI SKLSEQMISL SNLAYLVIFY NTRSNDQKDI NLLGCIPKLL
801: YLKVIFAQGW EDGLTVGCGG FPCLKELMFR HSRLHWLLFE PGAMPKLQRL SIELFAQKAA SKLGFEQSFV HLSSLQHLIV VLDCSDAHYK GRESFGRCH
001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS
Arabidopsis Description
RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.