Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g062400.2.1 | Tomato | nucleus | 98.57 | 98.57 |
| PGSC0003DMT400039656 | Potato | nucleus | 92.86 | 93.53 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 85.0 | 83.8 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 82.86 | 81.69 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 81.43 | 80.28 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 81.43 | 80.28 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 80.71 | 79.58 |
| PGSC0003DMT400076572 | Potato | cytosol | 45.0 | 43.15 |
| PGSC0003DMT400054878 | Potato | nucleus | 28.57 | 27.78 |
Protein Annotations
| Gene3D:1.10.260.40 | EntrezGene:102583301 | MapMan:35.1 | ncoils:Coil | InterPro:Cro/C1-type_HTH | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043565 | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf |
| UniProt:M1AAD4 | InterPro:MBF1_N | PFAM:PF01381 | PFAM:PF08523 | EnsemblPlantsGene:PGSC0003DMG400007099 | PGSC:PGSC0003DMG400007099 |
| EnsemblPlants:PGSC0003DMT400018290 | PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF23 | SMART:SM00530 | SUPFAM:SSF47413 |
| UniParc:UPI000295E507 | RefSeq:XP_006348316.1 | : | : | : | : |
Description
Multiprotein bridging factor 1c [Source:PGSC_GENE;Acc:PGSC0003DMG400007099]
Coordinates
chr7:-:52537202..52540143
Molecular Weight (calculated)
15415.5 Da
IEP (calculated)
10.845
GRAVY (calculated)
-0.809
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGLSQDWE PVVIRKKAPT AAARKDEKAV NAARRSGAEI ETVRKSTAGI NRAASSSTTL NTRKLDEDTE NLAHQKVPTE LKKAIMQARQ DKKLTQSQLA
101: QLINEKPQII QEYESGKAIP NQQIISKLER ALGAKLRGKK
101: QLINEKPQII QEYESGKAIP NQQIISKLER ALGAKLRGKK
001: MAGIGPITQD WEPVVIRKRA PNAAAKRDEK TVNAARRSGA DIETVRKFNA GSNKAASSGT SLNTKKLDDD TENLSHDRVP TELKKAIMQA RGEKKLTQSQ
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1BMultiprotein-bridging factor 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9LXT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.