Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25791 | Soybean | nucleus | 25.0 | 39.56 |
| Bra007411.1-P | Field mustard | nucleus | 24.31 | 30.7 |
| PGSC0003DMT400018290 | Potato | nucleus | 27.78 | 28.57 |
| HORVU3Hr1G029320.4 | Barley | nucleus, plastid | 27.78 | 27.97 |
| Zm00001d032359_P002 | Maize | extracellular | 27.08 | 27.46 |
| PGSC0003DMT400039656 | Potato | nucleus | 26.39 | 27.34 |
| Zm00001d049320_P001 | Maize | nucleus | 26.39 | 26.76 |
| Bra000272.1-P | Field mustard | nucleus | 26.39 | 26.76 |
| TraesCS3D01G151300.1 | Wheat | nucleus | 26.39 | 26.76 |
| TraesCS3B01G169100.1 | Wheat | nucleus | 26.39 | 26.76 |
| CDX83520 | Canola | nucleus | 26.39 | 26.76 |
| TraesCS3A01G135300.1 | Wheat | nucleus | 26.39 | 26.76 |
| CDX98319 | Canola | nucleus | 26.39 | 26.76 |
| CDY42821 | Canola | nucleus | 26.39 | 26.76 |
| EES14877 | Sorghum | nucleus | 25.69 | 26.06 |
| AT2G42680.1 | Thale cress | nucleus | 25.69 | 26.06 |
| CDY50816 | Canola | nucleus | 25.69 | 26.06 |
| CDX88998 | Canola | nucleus | 25.69 | 26.06 |
| CDX79844 | Canola | nucleus | 25.69 | 26.06 |
| Bra004725.1-P | Field mustard | nucleus | 25.69 | 26.06 |
| AT3G58680.1 | Thale cress | nucleus | 25.69 | 26.06 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 25.0 | 25.35 |
| CDY00581 | Canola | nucleus | 25.0 | 25.35 |
| Bra014559.1-P | Field mustard | nucleus | 25.0 | 25.35 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 23.61 | 23.94 |
| TraesCS2B01G407000.1 | Wheat | nucleus | 23.61 | 23.94 |
| TraesCS2D01G386800.1 | Wheat | nucleus | 23.61 | 23.94 |
| CDY49243 | Canola | cytosol | 26.39 | 22.49 |
| PGSC0003DMT400076572 | Potato | cytosol | 22.22 | 21.92 |
| CDY52458 | Canola | nucleus | 11.81 | 14.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054878 | EnsemblPlantsGene:PGSC0003DMG400021299 | Gene3D:1.10.260.40 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0043565 | InterPro:Cro/C1-type_HTH | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | PANTHER:PTHR10245 |
| PANTHER:PTHR10245:SF23 | PFAM:PF01381 | PFscan:PS50943 | PGSC:PGSC0003DMG400021299 | SEG:seg | SMART:SM00530 |
| SUPFAM:SSF47413 | UniParc:UPI000294E0AF | UniProt:M1BX07 | MapMan:35.2 | : | : |
Description
Multiprotein bridging factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021299]
Coordinates
chr10:+:2448697..2449338
Molecular Weight (calculated)
16383.0 Da
IEP (calculated)
12.456
GRAVY (calculated)
-0.765
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSICGSKRRT SPIIVNVHHN QVPPHINHPP PRNNLFIIPN QNQPWVPPHI NPPPPRNNRV IVPNQNQSRP PKNPVIVVNQ NKPFKLRDAI LHARNRKNLS
101: QVQLAQKINV KPQKIQEYES GRALPSQVTI SKLQNVLGVR LQGK
101: QVQLAQKINV KPQKIQEYES GRALPSQVTI SKLQNVLGVR LQGK
001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.