CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032359_P002	Maize	extracellular	97.89	97.89
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	97.89	97.89
Zm00001d049320_P001	Maize	nucleus	97.18	97.18
TraesCS2D01G386800.1	Wheat	nucleus	91.55	91.55
TraesCS2B01G407000.1	Wheat	nucleus	91.55	91.55
TraesCS2A01G389000.1	Wheat	nucleus	91.55	91.55
KRH25792	Soybean	nucleus	88.03	88.03
KRH55727	Soybean	nucleus	86.62	86.62
KRH55726	Soybean	nucleus	86.62	86.62
GSMUA_Achr1P04810_001	Banana	nucleus	85.21	85.21
GSMUA_Achr9P00250_001	Banana	nucleus	82.39	82.39
VIT_19s0014g01260.t01	Wine grape	nucleus	82.39	82.39
AT2G42680.1	Thale cress	nucleus	82.39	82.39
GSMUA_Achr1P11510_001	Banana	nucleus	82.39	82.39
CDX83520	Canola	nucleus	82.39	82.39
CDX88998	Canola	nucleus	82.39	82.39
Bra000272.1-P	Field mustard	nucleus	82.39	82.39
CDY42821	Canola	nucleus	82.39	82.39
CDX98319	Canola	nucleus	82.39	82.39
Bra014559.1-P	Field mustard	nucleus	81.69	81.69
CDY00581	Canola	nucleus	80.99	80.99
Bra004725.1-P	Field mustard	nucleus	80.99	80.99
CDX79844	Canola	nucleus	80.99	80.99
Solyc10g007350.2.1	Tomato	nucleus	78.87	80.58
CDY50816	Canola	nucleus	80.28	80.28
AT3G58680.1	Thale cress	nucleus	80.28	80.28
VIT_12s0028g02020.t01	Wine grape	nucleus	80.28	80.28
Solyc12g014290.1.1	Tomato	nucleus	78.17	79.86
Solyc09g055470.1.1	Tomato	nucleus	77.46	79.14
Bra007411.1-P	Field mustard	nucleus	61.97	77.19
Solyc07g062400.2.1	Tomato	nucleus	76.06	77.14
CDY52458	Canola	nucleus	56.34	68.38
CDY49243	Canola	cytosol	78.87	66.27
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	90.14	57.14
EER89991	Sorghum	cytosol	49.3	45.16
PGSC0003DMT400054878	Potato	nucleus	26.06	25.69

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	EntrezGene:8071003	UniProt:C5YK78	ncoils:Coil	InterPro:Cro/C1-type_HTH
EnsemblPlants:EES14877	ProteinID:EES14877	ProteinID:EES14877.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0043565	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf	InterPro:MBF1_N	ProteinID:OQU80294.1
PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF101	SMART:SM00530
EnsemblPlantsGene:SORBI_3007G106400	SUPFAM:SSF47413	unigene:Sbi.14570	UniParc:UPI0001A87922	RefSeq:XP_002445382.1	:

Description

hypothetical protein

Coordinates

chr7:-:37903523..37907177

Molecular Weight (calculated)

15650.9 Da

IEP (calculated)

10.688

GRAVY (calculated)

-0.846

Length

142 amino acids

Sequence
(BLAST)

001: MAGIGPIRQD WEPVVVRKKA PTAAAKKDEK AVNAARRAGA EIETMKKYNA GTNKAASSGT SLNTKRLDDD TENLAHERVP SDLKKNLMQA RLDKKMTQAQ
101: LAQMINEKPQ VIQEYESGKA IPNQQIIGKL ERALGTKLRG KK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.