CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000272.1-P	Field mustard	nucleus	100.0	100.0
CDY42821	Canola	nucleus	100.0	100.0
CDX98319	Canola	nucleus	97.18	97.18
CDX79844	Canola	nucleus	94.37	94.37
CDX88998	Canola	nucleus	93.66	93.66
CDY50816	Canola	nucleus	93.66	93.66
AT2G42680.1	Thale cress	nucleus	92.96	92.96
CDY00581	Canola	nucleus	90.85	90.85
KRH55726	Soybean	nucleus	87.32	87.32
KRH55727	Soybean	nucleus	85.92	85.92
KRH25792	Soybean	nucleus	85.92	85.92
Zm00001d032359_P002	Maize	extracellular	83.1	83.1
Solyc10g007350.2.1	Tomato	nucleus	80.99	82.73
Zm00001d049320_P001	Maize	nucleus	82.39	82.39
VIT_12s0028g02020.t01	Wine grape	nucleus	82.39	82.39
EES14877	Sorghum	nucleus	82.39	82.39
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	81.69	81.69
Solyc09g055470.1.1	Tomato	nucleus	79.58	81.3
Solyc12g014290.1.1	Tomato	nucleus	79.58	81.3
VIT_19s0014g01260.t01	Wine grape	nucleus	80.28	80.28
GSMUA_Achr1P11510_001	Banana	nucleus	80.28	80.28
TraesCS3D01G151300.1	Wheat	nucleus	80.28	80.28
TraesCS3B01G169100.1	Wheat	nucleus	80.28	80.28
TraesCS3A01G135300.1	Wheat	nucleus	80.28	80.28
CDY52458	Canola	nucleus	65.49	79.49
Solyc07g062400.2.1	Tomato	nucleus	78.17	79.29
TraesCS2A01G389000.1	Wheat	nucleus	78.87	78.87
TraesCS2B01G407000.1	Wheat	nucleus	78.87	78.87
TraesCS2D01G386800.1	Wheat	nucleus	78.87	78.87
GSMUA_Achr1P04810_001	Banana	nucleus	78.87	78.87
CDY49243	Canola	cytosol	92.96	78.11
GSMUA_Achr9P00250_001	Banana	nucleus	77.46	77.46
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	79.58	50.45
CDX77422	Canola	cytosol	49.3	47.3
CDY39547	Canola	cytosol	49.3	32.56
PGSC0003DMT400054878	Potato	nucleus	26.76	26.39

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	GO:A0A078HYT1	UniProt:A0A078HYT1	EnsemblPlants:CDX83520	ProteinID:CDX83520
ProteinID:CDX83520.1	ProteinID:CDY42821.1	InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00139116001	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf	InterPro:MBF1_N
PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF23	SMART:SM00530
SUPFAM:SSF47413	UniParc:UPI0001BA7BD2	:	:	:	:

Description

BnaA03g19860DBnaA03g19860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYT1]

Coordinates

chrLK031832:-:1916614..1917844

Molecular Weight (calculated)

15665.7 Da

IEP (calculated)

10.715

GRAVY (calculated)

-0.875

Length

142 amino acids

Sequence
(BLAST)

001: MAGVGPMTQD WEPVVIRKRA PNSAAKRDEK TVNAARRSGA DIESVRKYNA GTNKAASSGT SLNTKRLDDD TENLAHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.