CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007411.1-P	Field mustard	nucleus	63.91	94.74
CDX98319	Canola	nucleus	78.7	93.66
CDX83520	Canola	nucleus	78.11	92.96
CDX88998	Canola	nucleus	78.11	92.96
CDY42821	Canola	nucleus	78.11	92.96
CDX79844	Canola	nucleus	76.92	91.55
CDY50816	Canola	nucleus	76.92	91.55
AT3G58680.1	Thale cress	nucleus	76.33	90.85
CDY00581	Canola	nucleus	75.74	90.14
KRH55726	Soybean	nucleus	71.01	84.51
KRH55727	Soybean	nucleus	71.01	84.51
KRH25792	Soybean	nucleus	71.01	84.51
VIT_12s0028g02020.t01	Wine grape	nucleus	68.05	80.99
Solyc12g014290.1.1	Tomato	nucleus	66.27	80.58
Solyc10g007350.2.1	Tomato	nucleus	66.27	80.58
Zm00001d049320_P001	Maize	nucleus	67.46	80.28
Zm00001d032359_P002	Maize	extracellular	66.86	79.58
GSMUA_Achr1P11510_001	Banana	nucleus	66.86	79.58
Solyc09g055470.1.1	Tomato	nucleus	65.09	79.14
EES14877	Sorghum	nucleus	66.27	78.87
VIT_19s0014g01260.t01	Wine grape	nucleus	66.27	78.87
CDY52458	Canola	nucleus	54.44	78.63
Solyc07g062400.2.1	Tomato	nucleus	65.09	78.57
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	65.68	78.17
TraesCS3A01G135300.1	Wheat	nucleus	65.68	78.17
TraesCS3B01G169100.1	Wheat	nucleus	65.68	78.17
TraesCS3D01G151300.1	Wheat	nucleus	65.68	78.17
GSMUA_Achr9P00250_001	Banana	nucleus	65.09	77.46
GSMUA_Achr1P04810_001	Banana	nucleus	65.09	77.46
TraesCS2A01G389000.1	Wheat	nucleus	63.31	75.35
TraesCS2B01G407000.1	Wheat	nucleus	63.31	75.35
TraesCS2D01G386800.1	Wheat	nucleus	63.31	75.35
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	63.91	48.21
CDX77422	Canola	cytosol	41.42	47.3
CDY39547	Canola	cytosol	42.01	33.02
PGSC0003DMT400054878	Potato	nucleus	22.49	26.39

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	GO:A0A078IJI5	UniProt:A0A078IJI5	EnsemblPlants:CDY49243	ProteinID:CDY49243
ProteinID:CDY49243.1	ncoils:Coil	InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00092633001	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf	InterPro:MBF1_N
PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF23	SMART:SM00530
SUPFAM:SSF47413	UniParc:UPI0004EEB276	:	:	:	:

Description

BnaA09g55220DBnaA09g55220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJI5]

Coordinates

chrLK032820:+:46211..47441

Molecular Weight (calculated)

18718.6 Da

IEP (calculated)

10.603

GRAVY (calculated)

-0.664

Length

169 amino acids

Sequence
(BLAST)

001: MAGVGPMTQD WEPVVIRKRA PNAAAKPDEK TVNAAWRSGA DIESVRKFNA GTNKAASSST SLNTKRLDDD TENLAHERVP TELKKAIMQA RGEKKLTQSQ
101: LAQLINEKPQ VIQEYEFGKA IPNQQILSKL ERALGAKLCG KKNKIYGQIC QVPVNTSILR VTKHKTVRQ

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.