CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77422	Canola	cytosol	65.58	95.27
Bra015048.1-P	Field mustard	cytosol	81.4	95.11
AT3G24500.1	Thale cress	cytosol	63.26	91.89
VIT_11s0016g04080.t01	Wine grape	cytosol	49.3	73.61
PGSC0003DMT400076572	Potato	cytosol	44.65	65.75
Solyc01g104740.2.1	Tomato	extracellular	42.79	63.01
EER89991	Sorghum	cytosol	42.33	58.71
TraesCS7D01G353800.1	Wheat	cytosol	41.86	58.44
TraesCS7A01G369500.1	Wheat	cytosol	40.0	56.95
Os06t0592500-01	Rice	cytosol	40.93	56.77
HORVU7Hr1G085130.1	Barley	cytosol	40.93	56.41
TraesCS7B01G259000.1	Wheat	cytosol	40.93	56.41
CDX98319	Canola	nucleus	33.02	50.0
CDY42821	Canola	nucleus	32.56	49.3
CDY50816	Canola	nucleus	32.56	49.3
CDX88998	Canola	nucleus	32.56	49.3
CDX83520	Canola	nucleus	32.56	49.3
CDX79844	Canola	nucleus	32.56	49.3
CDY00581	Canola	nucleus	31.63	47.89
Zm00001d046471_P001	Maize	nucleus, plastid	32.09	43.4
CDY49243	Canola	cytosol	33.02	42.01
CDY52458	Canola	nucleus	21.4	39.32

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	GO:A0A078HNY6	UniProt:A0A078HNY6	EnsemblPlants:CDY39547	ProteinID:CDY39547
ProteinID:CDY39547.1	ncoils:Coil	InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00068090001	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf	InterPro:MBF1_N
PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF71	SMART:SM00530
SUPFAM:SSF47413	UniParc:UPI0004EDBECB	:	:	:	:

Description

BnaC07g07150DBnaC07g07150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNY6]

Coordinates

chrLK032451:-:149459..151931

Molecular Weight (calculated)

24086.0 Da

IEP (calculated)

10.676

GRAVY (calculated)

-0.654

Length

215 amino acids

Sequence
(BLAST)

001: MPSRYPGAVT QDWEPVVLHK TKPKSQDLRN PKAVNAALRS GLAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPSAM DRVKAEVRLA IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKIEKVLGV KLRAYPQAGE KLNAAARTNP NPHVTLLVAL DCARQSFHVA HVQSNSERQF HLIRTQSLFN
201: LKYNTTRKHM LNYEN

Best Arabidopsis Sequence Match ( AT3G24500.1 )
(BLAST)

001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK

Arabidopsis Description

MBF1CMBF1C [Source:UniProtKB/TrEMBL;Acc:A0A178VDH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.