Factsheet for Solyc01g104740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076572	Potato	cytosol	93.15	93.15
VIT_11s0016g04080.t01	Wine grape	cytosol	68.49	69.44
AT3G24500.1	Thale cress	cytosol	66.44	65.54
CDX77422	Canola	cytosol	65.07	64.19
TraesCS7D01G353800.1	Wheat	cytosol	58.9	55.84
HORVU7Hr1G085130.1	Barley	cytosol	59.59	55.77
TraesCS7A01G369500.1	Wheat	cytosol	57.53	55.63
TraesCS7B01G259000.1	Wheat	cytosol	58.22	54.49
EER89991	Sorghum	cytosol	57.53	54.19
Os06t0592500-01	Rice	cytosol	56.85	53.55
Bra015048.1-P	Field mustard	cytosol	64.38	51.09
Solyc12g014290.1.1	Tomato	nucleus	43.84	46.04
Solyc07g062400.2.1	Tomato	nucleus	43.84	45.71
Solyc10g007350.2.1	Tomato	nucleus	42.47	44.6
Solyc09g055470.1.1	Tomato	nucleus	41.1	43.17
CDY39547	Canola	cytosol	63.01	42.79
Zm00001d046471_P001	Maize	nucleus, plastid	43.84	40.25

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003713	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009414	GO:GO:0009628
GO:GO:0009719	GO:GO:0009737	GO:GO:0043565	InterPro:IPR001387	UniProt:K4B246	InterPro:Lambda_DNA-bd_dom_sf
InterPro:MBF1_N	PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF71
SMART:SM00530	SUPFAM:SSF47413	EnsemblPlantsGene:Solyc01g104740.2	EnsemblPlants:Solyc01g104740.2.1	UniParc:UPI0001E22A03	SEG:seg

Description

Multiprotein-bridging factor 1c [Source:Projected from Arabidopsis thaliana (AT3G24500) UniProtKB/Swiss-Prot;Acc:Q9LV58]

Coordinates

chr1:+:93125553..93126450

Molecular Weight (calculated)

16033.9 Da

IEP (calculated)

10.878

GRAVY (calculated)

-0.504

Length

146 amino acids

Sequence
(BLAST)

001: MPMRPTGGLK QDWDPIVLQK PKMKAQDLKD PKIVNQALRA GAQVQTVKKI DAGLNKKAAT LAVNVRKLDE AAEPAALEKL PVGVRQAIQK ARIEKKMSQA
101: DLAKKINERT QVVAEYENGK AVPNQLVLGK MENVLGVKLR GKIHKS

Best Arabidopsis Sequence Match ( AT3G24500.1 )
(BLAST)

001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK

Arabidopsis Description

MBF1CMBF1C [Source:UniProtKB/TrEMBL;Acc:A0A178VDH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.