Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g055470.1.1 | Tomato | nucleus | 98.56 | 98.56 |
| Solyc12g014290.1.1 | Tomato | nucleus | 92.81 | 92.81 |
| Solyc07g062400.2.1 | Tomato | nucleus | 92.09 | 91.43 |
| KRH25792 | Soybean | nucleus | 88.49 | 86.62 |
| KRH55726 | Soybean | nucleus | 88.49 | 86.62 |
| KRH55727 | Soybean | nucleus | 88.49 | 86.62 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 84.89 | 83.1 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 84.89 | 83.1 |
| AT3G58680.1 | Thale cress | nucleus | 84.17 | 82.39 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 84.17 | 82.39 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 84.17 | 82.39 |
| CDX98319 | Canola | nucleus | 83.45 | 81.69 |
| CDY50816 | Canola | nucleus | 83.45 | 81.69 |
| CDX79844 | Canola | nucleus | 83.45 | 81.69 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 83.45 | 81.69 |
| Bra004725.1-P | Field mustard | nucleus | 83.45 | 81.69 |
| CDY42821 | Canola | nucleus | 82.73 | 80.99 |
| CDX83520 | Canola | nucleus | 82.73 | 80.99 |
| AT2G42680.1 | Thale cress | nucleus | 82.73 | 80.99 |
| Bra000272.1-P | Field mustard | nucleus | 82.73 | 80.99 |
| Bra007411.1-P | Field mustard | nucleus | 66.19 | 80.7 |
| Zm00001d049320_P001 | Maize | nucleus | 82.01 | 80.28 |
| Bra014559.1-P | Field mustard | nucleus | 82.01 | 80.28 |
| CDX88998 | Canola | nucleus | 82.01 | 80.28 |
| Zm00001d032359_P002 | Maize | extracellular | 81.3 | 79.58 |
| EES14877 | Sorghum | nucleus | 80.58 | 78.87 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 79.86 | 78.17 |
| CDY00581 | Canola | nucleus | 79.14 | 77.46 |
| TraesCS3D01G151300.1 | Wheat | nucleus | 77.7 | 76.06 |
| TraesCS3B01G169100.1 | Wheat | nucleus | 77.7 | 76.06 |
| TraesCS3A01G135300.1 | Wheat | nucleus | 77.7 | 76.06 |
| TraesCS2B01G407000.1 | Wheat | nucleus | 76.98 | 75.35 |
| TraesCS2D01G386800.1 | Wheat | nucleus | 76.98 | 75.35 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 76.98 | 75.35 |
| KRH25791 | Soybean | nucleus | 44.6 | 68.13 |
| CDY49243 | Canola | cytosol | 80.58 | 66.27 |
| CDY52458 | Canola | nucleus | 54.68 | 64.96 |
| HORVU3Hr1G029320.4 | Barley | nucleus, plastid | 55.4 | 53.85 |
| HORVU2Hr1G092600.4 | Barley | extracellular, nucleus | 75.54 | 46.88 |
| Solyc01g104740.2.1 | Tomato | extracellular | 44.6 | 42.47 |
Protein Annotations
| Gene3D:1.10.260.40 | MapMan:35.1 | ProteinID:ABG29112.1 | ncoils:Coil | InterPro:Cro/C1-type_HTH | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043565 | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf |
| InterPro:MBF1_N | PFAM:PF01381 | PFAM:PF08523 | PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF23 |
| UniProt:Q152U9 | SMART:SM00530 | SUPFAM:SSF47413 | EnsemblPlantsGene:Solyc10g007350.2 | EnsemblPlants:Solyc10g007350.2.1 | UniParc:UPI00000AAC54 |
| SEG:seg | : | : | : | : | : |
Description
Multiprotein bridging factor 1a [Source:UniProtKB/TrEMBL;Acc:Q152U9]
Coordinates
chr10:+:1740404..1747481
Molecular Weight (calculated)
15336.3 Da
IEP (calculated)
10.709
GRAVY (calculated)
-0.899
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGISQDWEP VVIRKKAPTS AARKDEKAVN AARRSGAEIE TVKKSNAGSN RAASSSTSLN TRKLDEDTEN LSHEKVPTEL KKAIMQARQD KKLTQSQLAQ
101: LINEKPQIIQ EYESGKAIPN QQIISKLERA LGAKLRGKK
101: LINEKPQIIQ EYESGKAIPN QQIISKLERA LGAKLRGKK
001: MAGIGPITQD WEPVVIRKRA PNAAAKRDEK TVNAARRSGA DIETVRKFNA GSNKAASSGT SLNTKKLDDD TENLSHDRVP TELKKAIMQA RGEKKLTQSQ
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1BMultiprotein-bridging factor 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9LXT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.