Factsheet for Zm00001d032359_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14877	Sorghum	nucleus	97.89	97.89
Zm00001d049320_P001	Maize	nucleus	96.48	96.48
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	95.77	95.77
TraesCS2D01G386800.1	Wheat	nucleus	90.85	90.85
TraesCS2B01G407000.1	Wheat	nucleus	90.85	90.85
TraesCS2A01G389000.1	Wheat	nucleus	90.85	90.85
KRH55726	Soybean	nucleus	87.32	87.32
KRH25792	Soybean	nucleus	87.32	87.32
KRH55727	Soybean	nucleus	85.92	85.92
GSMUA_Achr1P04810_001	Banana	nucleus	85.21	85.21
CDX83520	Canola	nucleus	83.1	83.1
CDX98319	Canola	nucleus	83.1	83.1
CDY42821	Canola	nucleus	83.1	83.1
AT2G42680.1	Thale cress	nucleus	83.1	83.1
Bra000272.1-P	Field mustard	nucleus	83.1	83.1
VIT_19s0014g01260.t01	Wine grape	nucleus	82.39	82.39
GSMUA_Achr9P00250_001	Banana	nucleus	82.39	82.39
CDX88998	Canola	nucleus	82.39	82.39
GSMUA_Achr1P11510_001	Banana	nucleus	82.39	82.39
Bra004725.1-P	Field mustard	nucleus	81.69	81.69
Bra014559.1-P	Field mustard	nucleus	81.69	81.69
CDX79844	Canola	nucleus	81.69	81.69
Solyc10g007350.2.1	Tomato	nucleus	79.58	81.3
AT3G58680.1	Thale cress	nucleus	80.99	80.99
CDY50816	Canola	nucleus	80.99	80.99
CDY00581	Canola	nucleus	80.99	80.99
Solyc12g014290.1.1	Tomato	nucleus	78.87	80.58
VIT_12s0028g02020.t01	Wine grape	nucleus	80.28	80.28
Solyc09g055470.1.1	Tomato	nucleus	78.17	79.86
Bra007411.1-P	Field mustard	nucleus	62.68	78.07
Solyc07g062400.2.1	Tomato	nucleus	76.76	77.86
CDY52458	Canola	nucleus	56.34	68.38
CDY49243	Canola	cytosol	79.58	66.86
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	89.44	56.7
Zm00001d046471_P001	Maize	nucleus, plastid	38.73	34.59
PGSC0003DMT400054878	Potato	nucleus	27.46	27.08

Protein Annotations

Gene3D:1.10.260.40	EntrezGene:100193883	MapMan:35.1	UniProt:B4FGM4	EMBL:BT036262	ncoils:Coil
InterPro:Cro/C1-type_HTH	EMBL:EU953145	EMBL:EU973803	EMBL:EU973816	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0043565	InterPro:IPR001387	EMBL:KJ727635	InterPro:Lambda_DNA-bd_dom_sf
InterPro:MBF1_N	ProteinID:ONM04924.1	ProteinID:ONM04925.1	PFAM:PF01381	PFAM:PF08523	PFscan:PS50943
PANTHER:PTHR10245	PANTHER:PTHR10245:SF101	SMART:SM00530	SUPFAM:SSF47413	UniParc:UPI00017B6EE7	EnsemblPlantsGene:Zm00001d032359
EnsemblPlants:Zm00001d032359_P002	EnsemblPlants:Zm00001d032359_T002	:	:	:	:

Description

Multiprotein-bridging factor 1a

Coordinates

chr1:-:223828341..223831895

Molecular Weight (calculated)

15648.9 Da

IEP (calculated)

10.688

GRAVY (calculated)

-0.836

Length

142 amino acids

Sequence
(BLAST)

001: MAGIGPIRQD WEPVVVRKKA PTAAAKKDEK AVNAARRAGA EIDTMKKYNA GTNKAASSGT SLNTKRLDDD TENLAHERVP SDLKKNLMQA RLDKKLTQAQ
101: LAQMINEKPQ VIQEYESGKA IPNQQIISKL ERALGTKLRG KK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.