Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79844 | Canola | nucleus | 100.0 | 100.0 |
| CDY50816 | Canola | nucleus | 99.3 | 99.3 |
| Bra007411.1-P | Field mustard | nucleus | 76.06 | 94.74 |
| Bra000272.1-P | Field mustard | nucleus | 94.37 | 94.37 |
| AT2G42680.1 | Thale cress | nucleus | 91.55 | 91.55 |
| Bra014559.1-P | Field mustard | nucleus | 90.85 | 90.85 |
| KRH55727 | Soybean | nucleus | 84.51 | 84.51 |
| KRH55726 | Soybean | nucleus | 84.51 | 84.51 |
| KRH25792 | Soybean | nucleus | 84.51 | 84.51 |
| Solyc12g014290.1.1 | Tomato | nucleus | 81.69 | 83.45 |
| Solyc10g007350.2.1 | Tomato | nucleus | 81.69 | 83.45 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 82.39 | 82.39 |
| Solyc09g055470.1.1 | Tomato | nucleus | 80.28 | 82.01 |
| Zm00001d032359_P002 | Maize | extracellular | 81.69 | 81.69 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 80.99 | 80.99 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 80.99 | 80.99 |
| EES14877 | Sorghum | nucleus | 80.99 | 80.99 |
| TraesCS3D01G151300.1 | Wheat | nucleus | 80.28 | 80.28 |
| TraesCS3B01G169100.1 | Wheat | nucleus | 80.28 | 80.28 |
| TraesCS3A01G135300.1 | Wheat | nucleus | 80.28 | 80.28 |
| Zm00001d049320_P001 | Maize | nucleus | 79.58 | 79.58 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 79.58 | 79.58 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 79.58 | 79.58 |
| Solyc07g062400.2.1 | Tomato | nucleus | 78.17 | 79.29 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 78.87 | 78.87 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 76.76 | 76.76 |
| TraesCS2B01G407000.1 | Wheat | nucleus | 76.76 | 76.76 |
| TraesCS2D01G386800.1 | Wheat | nucleus | 76.76 | 76.76 |
| HORVU2Hr1G092600.4 | Barley | extracellular, nucleus | 77.46 | 49.11 |
| Bra015048.1-P | Field mustard | cytosol | 50.0 | 38.59 |
| PGSC0003DMT400054878 | Potato | nucleus | 26.06 | 25.69 |
Protein Annotations
| Gene3D:1.10.260.40 | MapMan:35.1 | EnsemblPlantsGene:Bra004725 | EnsemblPlants:Bra004725.1 | EnsemblPlants:Bra004725.1-P | ncoils:Coil |
| InterPro:Cro/C1-type_HTH | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043565 |
| InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | UniProt:M4CKJ0 | InterPro:MBF1_N | PFAM:PF01381 | PFAM:PF08523 |
| PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF23 | SMART:SM00530 | SUPFAM:SSF47413 | UniParc:UPI0001FC890E |
Description
AT2G42680 (E=2e-069) MBF1A, ATMBF1A | MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator
Coordinates
chrA05:-:1531169..1531981
Molecular Weight (calculated)
15684.7 Da
IEP (calculated)
10.618
GRAVY (calculated)
-0.889
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTGPMTQD WEPVVIRKRA PNSAAKRDEK TVNAARRAGA DIETVRKYNA GTNKAASSST SLNTKTLDDD TENLTHERVP TELKKAIMQA RTEKKLTQSQ
101: LAQLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
001: MAGIGPITQD WEPVVIRKRA PNAAAKRDEK TVNAARRSGA DIETVRKFNA GSNKAASSGT SLNTKKLDDD TENLSHDRVP TELKKAIMQA RGEKKLTQSQ
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1BMultiprotein-bridging factor 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9LXT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.